Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24983g00001 ATGAATATCGAAGAGTCTGTGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCATGGCTGATCTTCTGAACAAAGTTAAAACAATTCCGGAGCCTTATCTTTCTGCCATCTGCGAAGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGGATCAATGGAAGCCAACGTGGTTACAACTACAAGAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTTTGGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAACCTCCTCCTACTCCTCCATCTGAACAATTTTCTGCAGAATTTTGCTCATTTATCTCTGCATG 533 0.3884 MNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLNKVKTIPEPYLSAICEVKITDFGVSAIMENTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPTPPSEQFSAEFCSFISA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24983g00001 177 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Trme24983g00001 177 SMART serkin_6 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24983g00001 177 SUPERFAMILY Protein kinase-like (PK-like) 4 176 IPR011009 -
Trme24983g00001 177 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 70 - -
Trme24983g00001 177 Gene3D Transferase(Phosphotransferase) domain 1 53 177 - -
Trme24983g00001 177 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24983g00001 177 Pfam Protein kinase domain 71 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24983g00001 177 Pfam Protein kinase domain 5 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24983g00001 Trme-Chr24983 38 866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24983g00001 1 177 MAP Kinase Kinase Gene Family AT4G29810 57.895 6.00e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme24983g00001 Pkinase 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24983g00001 K20603 - gmx:100789734 322.398