Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme249837g00001 ATGAAAGACGGCAGTGTTGTTGCTATCAAGAAACTCATCCGTGTCACAGGTCAAGGAGACAGAGAGTTCATAGCCGAAATGGAAACGATCGGAAAGATTAAGCACAGGAACCTTGTTCCACTTCTTGGTTACTGTAAAGTTGGAGATGAAAGGCTACTTGTGTATGAGTACATGAAATATGGAAGCTTAGAAACTGTTCTACATGAGAGGAACAAAAGTTCAAAGCTTGCTTGGGATACAAGAAAGAAGATAGCACTAGGATCAGCAAGAG 271 0.4133 MKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERNKSSKLAWDTRKKIALGSAR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme249837g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 90 - -
Trme249837g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme249837g00001 90 Pfam Protein tyrosine and serine/threonine kinase 5 79 IPR001245 GO:0004672|GO:0006468
Trme249837g00001 90 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 90 - -
Trme249837g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 4 89 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme249837g00001 Trme-Chr249837 30 300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme249837g00001 1 90 Receptor kinase-like Gene Family AT1G55610 81.053 8.36e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme249837g00001 PK_Tyr_Ser-Thr 5.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme249837g00001 - K13415 ming:122073970 154.066