Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24978g00001 GTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAACCGTATATCATTAACCTTATGGATGAACTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCCGTGAACCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATCCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCAGGAATCTTGTTTGTACTGGTATGCTAATTGCAGTTCAGCTTCCTGCTATAGATGACATGAGTGTTTCTTTGTATTTTCTATGA 735 0.3986 VILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTGMLIAVQLPAIDDMSVSLYFL 244
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme24978g00001 244 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 76 84 IPR000629 -
Trme24978g00001 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 226 IPR027417 -
Trme24978g00001 244 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 130 IPR014001 -
Trme24978g00001 244 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 140 244 IPR001650 -
Trme24978g00001 244 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 225 - -
Trme24978g00001 244 Pfam DEAD/DEAH box helicase 1 118 IPR011545 GO:0003676|GO:0005524
Trme24978g00001 244 Gene3D - 1 137 IPR027417 -
Trme24978g00001 244 Pfam Helicase conserved C-terminal domain 155 224 IPR001650 -
Trme24978g00001 244 CDD SF2_C_DEAD 141 223 - -
Trme24978g00001 244 Gene3D - 138 229 IPR027417 -
Trme24978g00001 244 SMART ultradead3 1 144 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme24978g00001 Trme-Chr24978 57 1174 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24978g00001 1 241 Eukaryotic Initiation Factors Gene Family AT1G72730 37.860 1.44e-48 163