Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme24978g00001 | GTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAACCGTATATCATTAACCTTATGGATGAACTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCCGTGAACCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATCCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCAGGAATCTTGTTTGTACTGGTATGCTAATTGCAGTTCAGCTTCCTGCTATAGATGACATGAGTGTTTCTTTGTATTTTCTATGA | 735 | 0.3986 | VILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTGMLIAVQLPAIDDMSVSLYFL | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme24978g00001 | 244 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 76 | 84 | IPR000629 | - | |
Trme24978g00001 | 244 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 226 | IPR027417 | - | |
Trme24978g00001 | 244 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 130 | IPR014001 | - | |
Trme24978g00001 | 244 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 140 | 244 | IPR001650 | - | |
Trme24978g00001 | 244 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 1 | 225 | - | - | |
Trme24978g00001 | 244 | Pfam | DEAD/DEAH box helicase | 1 | 118 | IPR011545 | GO:0003676|GO:0005524 | |
Trme24978g00001 | 244 | Gene3D | - | 1 | 137 | IPR027417 | - | |
Trme24978g00001 | 244 | Pfam | Helicase conserved C-terminal domain | 155 | 224 | IPR001650 | - | |
Trme24978g00001 | 244 | CDD | SF2_C_DEAD | 141 | 223 | - | - | |
Trme24978g00001 | 244 | Gene3D | - | 138 | 229 | IPR027417 | - | |
Trme24978g00001 | 244 | SMART | ultradead3 | 1 | 144 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme24978g00001 | Trme-Chr24978 | 57 | 1174 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme24978g00001 | 1 | 241 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 37.860 | 1.44e-48 | 163 |