Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24977g00001 ATGATTTTGGACAAGAAAGACATTGAGGAAACTCATTACGAGGTTCTCAATGTCAAGGAGGATGCAAATTATGAAGAAATCCGTGCTAGTTACCGAAGTGCTGCACTCAGTTTACATCCTGATAAACTATTGAAGACATCTGATACATCCAGCAGTGACATAACAACTTCAGAGAGATTTCTCAAAGTACACAAAGCATGGGAAATTCTAAGCGATTCAACCACTCGTTTATTTTATGACAAGGAGCTCAAAAGTTCAAGGCGGGAGGATTTCTTG 276 0.3913 MILDKKDIEETHYEVLNVKEDANYEEIRASYRSAALSLHPDKLLKTSDTSSSDITTSERFLKVHKAWEILSDSTTRLFYDKELKSSRREDFL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24977g00001 92 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 9 89 - -
Trme24977g00001 92 PRINTS DnaJ domain signature 31 46 IPR001623 -
Trme24977g00001 92 PRINTS DnaJ domain signature 13 31 IPR001623 -
Trme24977g00001 92 PRINTS DnaJ domain signature 55 75 IPR001623 -
Trme24977g00001 92 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Trme24977g00001 92 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Trme24977g00001 92 SMART dnaj_3 10 75 IPR001623 -
Trme24977g00001 92 CDD DnaJ 11 72 IPR001623 -
Trme24977g00001 92 Pfam DnaJ domain 11 80 IPR001623 -
Trme24977g00001 92 Gene3D DnaJ domain 2 88 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24977g00001 Trme-Chr24977 1 276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24977g00001 11 80 C2H2 Transcription Factor Family AT1G74250 42.857 1.52e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24977g00001 K17867 - gmx:100814856 129.413