Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24929g00001 ATGCTGACTAATGAAGCTGGCGAAGTTACTAGTCATTTGCAAGGAATGTTTTCGCGGACAATCAGACTTCTAGAAGCGGGGATGAAGCCAGTGTATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGTTGAAAAAACGGCTTTCAAAGAGAGCTGAGGCTACCGCGGGTTTGTCGGAAGCTATAGAGACTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGATGACTGCAAAAGACTTTTAAGACTCATGGGAGTCCCCGTTGTTGAGGCACCCTCTGAAGCAGAGGCTCAGTGTGCTGCTCTTTGCAAAGCTGGAAAGGCAAGTTCACATCTGCT 377 0.4509 MLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLSEAIETDNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSHLL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24929g00001 126 CDD PIN_FEN1 1 121 - -
Trme24929g00001 126 SMART xpgn3 1 56 IPR006085 GO:0004518
Trme24929g00001 126 Gene3D - 1 124 - -
Trme24929g00001 126 FunFam Flap endonuclease 1 1 124 - -
Trme24929g00001 126 ProSitePatterns XPG protein signature 2. 98 112 IPR019974 GO:0016788
Trme24929g00001 126 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 94 111 IPR006084 -
Trme24929g00001 126 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 30 49 IPR006084 -
Trme24929g00001 126 Pfam XPG N-terminal domain 8 56 IPR006085 GO:0004518
Trme24929g00001 126 Pfam XPG I-region 98 122 IPR006086 GO:0004518
Trme24929g00001 126 SUPERFAMILY PIN domain-like 2 121 IPR029060 -
Trme24929g00001 126 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 10 121 IPR006084 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24929g00001 1 121 Core DNA Replication Machinery Family AT5G26680 86.777 3.45e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24929g00001 K04799 - gmx:100808044 220.32