Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24919g00001 ATGGATGTTGTTTCTATTCCCAAAACAAATGAAAATTTCCGTCTTCTTTATGACACCAAGGGTCGGTTCCGTCTCCACTCTTTGAGGGATGATGAGGCAAAGTTTAAACTCTGCAAGGTTCGATCTGTTCAATTCGGGCAGAAGGGTATTCCCTATTTGAACACCTATGATGGTCGCACCATCCGCTATCCAGACCCACTAATTAAGGCTAATGACACCATCAAACTTGACCTTGAAAACAACAAGATCACTGATTTTATCAAGTTTGACGTGGGGAATGTTGTCATGGTTACTGGAGGAAGGAATAGAGGCCGTGTTGGTGTCATCAAGAACAGAGAAAAACATAAAGGAACTTTCGAGACTATCCACGTCCAGGATGCAAGTGGTCATGAGTTTGCAACTCGGTTGGGCAATGTCTTCACTATTGGCAAAGGAACAAAGCCTTGGGTGTCTCTTCCTAAAGGCAAAG 469 0.435 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNVFTIGKGTKPWVSLPKGK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24919g00001 156 Gene3D - 1 31 IPR036986 GO:0003723
Trme24919g00001 156 Gene3D - 89 156 IPR014722 -
Trme24919g00001 156 Pfam 40S ribosomal protein S4 C-terminus 126 156 IPR032277 -
Trme24919g00001 156 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 156 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme24919g00001 156 Pfam KOW motif 91 124 IPR005824 -
Trme24919g00001 156 CDD KOW_RPS4 89 143 IPR041982 -
Trme24919g00001 156 FunFam 40S ribosomal protein S4 36 86 - -
Trme24919g00001 156 Gene3D - 36 86 IPR038237 -
Trme24919g00001 156 FunFam 40S ribosomal protein S4 89 156 - -
Trme24919g00001 156 SMART kow_9 88 115 IPR005824 -
Trme24919g00001 156 Pfam Ribosomal family S4e 9 83 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24919g00001 Trme-Chr24919 44 1233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24919g00001 1 156 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.667 5.94e-108 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24919g00001 K02987 - mnt:21390349 294.278