Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2489g00001 ATGAATGGGAAAAAGACTAAAACGACAAAAGAAACACACTCTTCAAAGATTCCAACTACTACAATAGGAATTTCTCGTGGTAGATTAACTTATGGAAAAACAACTCAAGGCTCACCTTTACCTAATATAAACCTTGGCCTGAAAATCTCCTTGCTTGATCTTCAAATTGCAACAGAGAATTTCAATGCAAAGAGGATAATTGGAATTGGTGGTTTTGGAAATGTTTATAAGGGAATTCTCAAGAATGGAATGAGTGTAGCTGTAAAAAGAAATGTGTCGGGGTCAGGTCAAGGATTTCTTGAATTTCAAACTGAGATAATGGTTTTGTCCAAGATTCGTCACATACACCTTGTTTCCTTAATAGGATATTGCGATGAAAAGAATGAGATGATACTTGTTTATGAGTACATGGAAAAGGGGACACTTAGAGAGAATTTGTACGGTACAAATTTGCCTTGTTTGACTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCCACTAGAGGTCTACATTACCTTCACAAAGGAGTATCCGGTGGAATAATTCACCGTGATGTGAAATCCACTAATATATTGCTTGATGAGAATCTTGTAGCTAAAGTTGCTGATTTTGGTCTGTCAAGGACAGGTCCTCTTGATCAAGATTCTTATGTTAGTACATGTGTTAAAGGAACTTTTGGGTATCTTGATCCTGATTATTTTCGATCACAACAACTTACAGAAAAATCCGATGTTTATTCTTTTGGGGTGGTTCTACTTGAAGTGTTGTGTGCAAGACCGGCTATCGAACTGTCTTGTCCAAGTGAACAAGTTAATTTGGCTGAGTGGGGATTGCTTTGCAAAAACAACGGGAAACTTGAAGAGATCGTTGATCCTTTCATCAAGGAACAAATTAATCAAAACTCACTTAGAATATTTGGTGAAATTGTGGAAAAATGTTTACAGGATGATGGTTGTGATAGGCCAACAATGGTTGATGTGTTGTGGGATTTGGAATATGTTTTGCAGCTTCATAGAGAACTACATGAGGATAGTTCTAGGAGTGCTTTTGTATCACTTCAATTGCCTAATGTTCAGCGTCTACTGTCTCTGTCTACATTAATTGAAGTCGATGGCATGTCGATTGACAAGGTTGATGAATCTAAAAGTACAACGTTGATGACGCTAGATAGAATTTCATGTGAGGCAAATCAAGGCACAACAATCAACTCGCAAGTATCGCCGCTACAGGAGCTGTTTTTTTAG 1245 0.3759 MNGKKTKTTKETHSSKIPTTTIGISRGRLTYGKTTQGSPLPNINLGLKISLLDLQIATENFNAKRIIGIGGFGNVYKGILKNGMSVAVKRNVSGSGQGFLEFQTEIMVLSKIRHIHLVSLIGYCDEKNEMILVYEYMEKGTLRENLYGTNLPCLTWKQRLEICIGATRGLHYLHKGVSGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDQDSYVSTCVKGTFGYLDPDYFRSQQLTEKSDVYSFGVVLLEVLCARPAIELSCPSEQVNLAEWGLLCKNNGKLEEIVDPFIKEQINQNSLRIFGEIVEKCLQDDGCDRPTMVDVLWDLEYVLQLHRELHEDSSRSAFVSLQLPNVQRLLSLSTLIEVDGMSIDKVDESKSTTLMTLDRISCEANQGTTINSQVSPLQELFF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2489g00001 414 CDD STKc_IRAK 67 332 - -
Trme2489g00001 414 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Trme2489g00001 414 ProSiteProfiles Protein kinase domain profile. 61 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2489g00001 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Trme2489g00001 414 Gene3D Phosphorylase Kinase; domain 1 31 136 - -
Trme2489g00001 414 Gene3D Transferase(Phosphotransferase) domain 1 137 354 - -
Trme2489g00001 414 SUPERFAMILY Protein kinase-like (PK-like) 41 333 IPR011009 -
Trme2489g00001 414 PANTHER OS07G0166700 PROTEIN 48 338 IPR045272 GO:0004714|GO:0006468
Trme2489g00001 414 FunFam receptor-like protein kinase FERONIA 29 136 - -
Trme2489g00001 414 FunFam Receptor-like protein kinase FERONIA 137 351 - -
Trme2489g00001 414 Pfam Protein tyrosine and serine/threonine kinase 63 328 IPR001245 GO:0004672|GO:0006468
Trme2489g00001 414 SMART serkin_6 61 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2489g00001 Trme-Chr2489 958 2202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2489g00001 4 346 Receptor kinase-like Gene Family AT2G23200 60.571 8.11e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme2489g00001 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2489g00001 - - mtr:25493508 558.14