Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme248968g00001 TTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCCATTTGTCTAACAAACTTGGACACGGCGGTTTTGGTACCGTTTATAAGGGGAAACTGCAAGATGGTCAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTGGAAGAATTCATGAACGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGTTGTATTGAAGGCGACGAGAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTG 298 0.406 FDFEKLATATNNFHLSNKLGHGGFGTVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIF 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme248968g00001 99 ProSitePatterns Protein kinases ATP-binding region signature. 19 41 IPR017441 GO:0005524
Trme248968g00001 99 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 88 - -
Trme248968g00001 99 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Trme248968g00001 99 SUPERFAMILY Protein kinase-like (PK-like) 2 98 IPR011009 -
Trme248968g00001 99 ProSiteProfiles Protein kinase domain profile. 13 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme248968g00001 99 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 99 - -
Trme248968g00001 99 Pfam Protein tyrosine and serine/threonine kinase 14 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme248968g00001 Trme-Chr248968 9 381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme248968g00001 1 99 Receptor kinase-like Gene Family AT4G23320 64.646 6.70e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme248968g00001 PK_Tyr_Ser-Thr 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme248968g00001 - - tpra:123892366 204.912