Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2488g00001 ATGCAAAGTGTTAAACTTGAGATTGAGATCATGGCGAAGTTATCAGGGCACCCTAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGCTGTTTCACCTGTTAGAGAAGCATGGAAGGTTTTCTGAATCTGAAGGAAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCACGAAAACGGGGTTGTTCACAGAGATTTGAAGCCTGAAAACATTCTATTAGCAACTAAGTCATTTTCGTCTCCAATTAAATTGGCCGACTTTGGTCTTGCAACCTACATTAAGCCTGGACAGAGTTTGCATGGTTTGGTTGGGAGTCCATTTTATATAGCTCCAGAGGTATTGGCAGGTGCATATAACCAGGCTGCTGATATTTGGAGTGCCGGGGTTATTCTTTACATTCTACTTAGCGGGATGCCGCCATTTTGGGGAAAGACAAAGTCTCGAATATTTGAAGCCGTTAAGGCTGCTGATTTGAGATTTCCATCTGAACCTTGGGATCGCATCTCTAAATCTGCTAAGGATTTAATTAGGCGAATGCTCTGCAGAGAAACTTCTCAAAGGCTCACTGCCCAAGAGGTTTTGGACCATTGCTGGATGGAAAGCGATCCAACAAATCTTGAACAACTAAGTGAACATAAAATCGAAAGTTGTGGAGAGTGGCATGTTGACGGCGGCTCCTTCTCTGCATCATTTATGTCGAGGAATGATGACATCAGCTTTGGCGCCGGATCACCTACATGCGACGCTCAATCACCTACATTCACATGTAAATCATCGTTTTCTTCCATTTTCGTGGAACCAGTTACACCTTTTTCTGCACCTAGCGGGTTTTCATTTCGGAGCACAGGTGGTTCCATTGGTTTGGAATTTTCTTCACCTGTTTCCTCGATGCCAAGCTTTGCATTTCTCAGTCCCAGTTCTGTTGTTGAGCAAAATAGTCTTATATTTGAGTTCTCGTCTAACACGACAGAAGTAAATGCAATTGCTGGAGGACATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTG 1089 0.4343 MQSVKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGRVLFRHLMQMVLYCHENGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISKSAKDLIRRMLCRETSQRLTAQEVLDHCWMESDPTNLEQLSEHKIESCGEWHVDGGSFSASFMSRNDDISFGAGSPTCDAQSPTFTCKSSFSSIFVEPVTPFSAPSGFSFRSTGGSIGLEFSSPVSSMPSFAFLSPSSVVEQNSLIFEFSSNTTEVNAIAGGHWDSTARETGQLDL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2488g00001 363 Gene3D Transferase(Phosphotransferase) domain 1 46 241 - -
Trme2488g00001 363 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2488g00001 363 CDD STKc_CAMK 1 216 - -
Trme2488g00001 363 SMART serkin_6 2 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2488g00001 363 FunFam Phosphoenolpyruvate carboxylase kinase 46 233 - -
Trme2488g00001 363 Pfam Protein kinase domain 3 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2488g00001 363 Gene3D Phosphorylase Kinase; domain 1 1 45 - -
Trme2488g00001 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
Trme2488g00001 363 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 225 - -
Trme2488g00001 363 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2488g00001 Trme-Chr2488 177 2441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2488g00001 1 222 EF-hand Containing Proteins AT3G57530 49.550 6.40e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme2488g00001 Pkinase 2.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2488g00001 - - psat:127091783 647.506