Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme248569g00001 AAAGAGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGATTTTTCGAATGATGCTCGTGCTATGCGTGAAAGAGCTCTTAAGCAAGCATCAGAGACTCTTAAGGGAAAGGGAACTGGCTCTGAGGATGGAAAATTATACAAGGGAATGAATAATTACAAAGATCATAAGGCTGGATTTCGGAGAGAGCACACAATTTCTGGTGAAAAGGCTGGTGGCTCACACGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTGTCGGCTAGATTTGATTATCAGCCTGATATATGCAAAGATTACAAGGAGACTGGGTACTGTGGTTATGGTGATTCGT 352 0.429 KEIQVQHDSKATATLETETDFSNDARAMRERALKQASETLKGKGTGSEDGKLYKGMNNYKDHKAGFRREHTISGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme248569g00001 117 MobiDBLite consensus disorder prediction 1 20 - -
Trme248569g00001 117 ProSiteProfiles Zinc finger C3H1-type profile. 97 117 IPR000571 GO:0046872
Trme248569g00001 117 MobiDBLite consensus disorder prediction 37 56 - -
Trme248569g00001 117 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 117 IPR000571 GO:0046872
Trme248569g00001 117 PANTHER ZINC FINGER PROTEIN 183 1 117 IPR039971 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme248569g00001 1 117 C2H2 Transcription Factor Family AT1G01350 81.197 9.58e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme248569g00001 zf-CCCH 8.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme248569g00001 K13127 - gmx:100817146 212.616