Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme248365g00001 AAGGGAAAGGTGGTGAAGTGCTCTGTTACTGAAAGAGTTGGTAAAAATGATATTTCTGAGGCTAAAGCTTTAGCTGCTTTGAAGAACCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAATGGTCATCTTGCAACATTGCGTGGTCTTGTGACTTCCACTGATCAAAAGAATTTTCTCAAAATCTTCTATTTGAAAATTGTGATCAAACTAGCATATGTTCTTCCATAA 234 0.3718 KGKVVKCSVTERVGKNDISEAKALAALKNHSEAEKRRRERINGHLATLRGLVTSTDQKNFLKIFYLKIVIKLAYVLP 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme248365g00001 77 Gene3D - 20 71 IPR036638 GO:0046983
Trme248365g00001 77 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 71 IPR036638 GO:0046983
Trme248365g00001 77 PANTHER TRANSCRIPTION FACTOR BHLH30 15 57 IPR045847 GO:0003700|GO:0006355
Trme248365g00001 77 Pfam Helix-loop-helix DNA-binding domain 29 58 IPR011598 GO:0046983
Trme248365g00001 77 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 76 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme248365g00001 18 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56770 42.857 4.25e-09 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme248365g00001 HLH 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme248365g00001 - - gmx:100804756 89.3521