Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2482g00001 ATGGGAACCATCCTACCTCCTTCAACTTCAAACTCTAATGGAGATTTTTCAATTGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATATTAATGCTCTGAAAGAATATGGAGGGGTTGCAGGGTTGTCAAATTTGTTGAAAACCAATTTAGTGAAAGGTGCTAAAGGTGATGATGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGACTATTTTAATGGTAGCTGCTGTGGCTTCATTAGCACTAGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTTCTTGTTATTGCTGTTACAGACAGACACAATTCCATGATCTACTTTGCCATTTACTGTGGAGCCGTAACCGATTATAAGCAGTCTCTTCAGTTTGAAGATTTAAATGAGCATAAAAGAAACATACATTTTCAGGTTATTAGAGATGGCAGAAGAGTTGAGATCTCTATATATGATGTTGTTGTAGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGCATGACCGGGGAGAGCAAGATTGTTAATAAGCATTCTAAGGAACCTTTTTTGATGTCTGGATGTAAAGTTGCTGATGGAAGCGGCACTATGCTGGTAACCGCTGTTGGTACTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGACGACACTGGTGAAGAAACACCTTTGCAGGTACGCTTGAATGGCCTTGCTACCTTCATCGGTATTGCTGGACTTACTGTGGCTGTCGTTGTTCTAGTTGTTCTACTGGCCAGATATTTCACTGGGCACACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGAAAGACCAGGTTCGGTGATGCTCTTAATGGAGTAATTAAGATAGCCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGACTCCCCTTAGCAGTTACCTTAAC 1091 0.4161 MGTILPPSTSNSNGDFSIGQEQLSSISREHDINALKEYGGVAGLSNLLKTNLVKGAKGDDADLVIRRNAFGSNNYPRKKGRSFLMFIWDACKDLTLTILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVFLVIAVTDRHNSMIYFAIYCGAVTDYKQSLQFEDLNEHKRNIHFQVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGTNTEWGLLMASISDDTGEETPLQVRLNGLATFIGIAGLTVAVVVLVVLLARYFTGHTKNPDGSVQFIAGKTRFGDALNGVIKIATVAVTIVVVAVPEGLPLAVTLT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2482g00001 364 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 364 IPR023298 -
Trme2482g00001 364 SMART Cation_ATPase_N_a_2 40 111 IPR004014 -
Trme2482g00001 364 SUPERFAMILY Calcium ATPase, transduction domain A 172 268 IPR008250 -
Trme2482g00001 364 Gene3D - 65 271 - -
Trme2482g00001 364 PANTHER CATION TRANSPORTING ATPASE 10 364 - -
Trme2482g00001 364 Pfam E1-E2 ATPase 173 364 - -
Trme2482g00001 364 Gene3D - 89 364 - -
Trme2482g00001 364 Pfam Cation transporter/ATPase, N-terminus 39 106 IPR004014 -
Trme2482g00001 364 FunFam Calcium-transporting ATPase 150 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2482g00001 Trme-Chr2482 109 2512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2482g00001 14 364 Primary Pumps ATPases AT5G57110 71.875 3.80e-165 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2482g00001 K01537 - gmx:100813841 540.036