Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24822g00001 ATGTGGTCTTTTGCTAGCATTGTTTTTGAACTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGACAAGGTTTTAGCGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTAGGCAAGATGCCCCGGAAGATTGCTACTTCTGGAGCTATGTCCAAGGATTACTTTGACAGGCATGGTGATCTAAAAAGGATTAGAAGGCTAAAATATTTGCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCCAATGATGCTCATGAGTTTTCAGCATTTCTTTCGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGACAGTGCCTGCAACACCCCTGGCTGAACTGCAAGGAATCAACACCAAATGAAATGAGAAATGAATCCACTGTTGAAAAGGTTAATGTTGGTATGAGCAACCTTAAAATCAAGGTAGGAAAGTGA 459 0.4118 MWSFASIVFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATSGAMSKDYFDRHGDLKRIRRLKYLPLDKLLIDRYKFSANDAHEFSAFLSPLFDFAPEKRPTARQCLQHPWLNCKESTPNEMRNESTVEKVNVGMSNLKIKVGK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24822g00001 152 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24822g00001 152 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
Trme24822g00001 152 Pfam Protein kinase domain 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24822g00001 152 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Trme24822g00001 152 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24822g00001 Trme-Chr24822 96 1185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24822g00001 1 121 EF-hand Containing Proteins AT5G22840 62.810 5.10e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme24822g00001 Pkinase 6.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24822g00001 K08832 - gmx:100784192 271.937