Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24819g00001 ATGGTTGGACAGAATTTAGTGGCGCAAGCTCTTTCGAATGCAGTGATGAGACGGAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATAGCACATGATATGGGAAAGAGTAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAACATCATGGATCTACTCGATAATATGATTATTTCCCAGCTTCCGTCACAGTACAGAGTGTTTATTTTTGACGATTGTGATACTCTGTCAGTAGATTGTTGGAATGCTATATCCAAGGTCATTGATCGAGCACCTAGACGAGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGTTAAAGGAATCAGATATCGTATATACACTGGAGCGGATTGCAACCAAAGAAGGACTAGATATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCCGACGGATCATTGAGAGACGCTGAGATGACACTTGAACAACTTAGTTTGCTTGGGCAGAGAATTTCTGTTCCTCTTGTTCAAGAGCTGGTAGGGCTTATCTCTGACGAGAAGTTAGTGGATCTACTTGACTTGGCATTATCTGCGGACACGGTAAATACTGTGAAGAATTTGAGAGTGATAATGGAAGCAGGTGTTGAACCATTAGCTTTGATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACTAAAGAAAGACGTAGAAGGAAATTCTTCCGAAGACAACCAT 886 0.3849 MVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALXXXXXXXXXXXXXXXXXIAHDMGKSRSIREVGPVSNFDFENIMDLLDNMIISQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKESDIVYTLERIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24819g00001 295 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1 273 - -
Trme24819g00001 295 FunFam DNA polymerase III subunit gamma/tau 162 224 - -
Trme24819g00001 295 CDD HLD_clamp_pol_III_gamma_tau 161 224 IPR045085 -
Trme24819g00001 295 Pfam DNA polymerase III, delta subunit 4 161 - -
Trme24819g00001 295 Coils Coil 42 45 - -
Trme24819g00001 295 Pfam DNA polymerase III subunits gamma and tau domain III 217 275 IPR022754 GO:0003887
Trme24819g00001 295 NCBIfam DNA polymerase III subunit gamma/tau 1 280 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trme24819g00001 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 209 IPR027417 -
Trme24819g00001 295 Gene3D - 162 224 - -
Trme24819g00001 295 Gene3D - 1 158 IPR027417 -
Trme24819g00001 295 SMART AAA_5 20 161 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24819g00001 Trme-Chr24819 134 1119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24819g00001 4 285 Core DNA Replication Machinery Family AT1G21690 23.944 1.85e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24819g00001 - - gmx:100809005 466.077