Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24818g00001 ATGGGTGGAAGAATAGAATGGGTGAAGGGTAAAATGGTTGGATGTGGATCTTTTGGCAGTGTTCATCTAGCCATGAATAAATCCAATGGTGGACTTTTCGTAGTGAAAACATCGGATTCAGAGGTAGGACGTGATGCTCTAAAGAACGAGGTGAATATACTAAATAGTTTAAATAATTCATCACCCTATATTGTCCAATGTTTAGGGACAGAGTATGATGATGATCAAGATAACAAACTAGTGCATGTTTTCATGGAATATATGGCTGGGGGTAGTTTGGCTGACGTTTTAAACAAGTTTGGAGGTTCATTAGATGAAGATGTTGTACGTTTGTATACTAGACAAATTCTCCTTGGGTTATATGATCTTCACAAACATGGAATTGTGCATTGTGACCTTAAGTGCAAAAATGTGCTTTTGGCCTCGTCTGGGAACGTCAAGCTGGCTGATTTAGGGTGTGCAAAAAGGGTAGAGAACAAAGCAGCATCATGTATTAATCTTACTAACGGTGGCACTCCTCTATGGATGGCTCCCGAAGTATTATTAAACGATGATGAGAAAGTTGTTGATTTTGCTGCAGATATATGGTCTTTGGGGTGTACTGTTATTGAAATGGCCACCGGCAGGCCTCCTTGGGCTGACATTTCAAATCCAATTGCTGCTATGTTTAAGATAGCTCGCGGTGATGAGATACCTCAATTTCCAGTTCATTTCTCTCGGGAAGGTTTTGATTTCTTGAGGAGGTGTTTGGTGAGAGATCCCAGTAAGAGGCCTACCGCACAGGAGTTACTTAACCACCCATTTATTATTTCAACTACTTTAACTCATCACAAACACTACTCTGCTTCCTCACCTGCAGCTGTTTTGGATGTTCATCAATTTGAGGATACCGATGATGATGATGATGA 908 0.4064 MGGRIEWVKGKMVGCGSFGSVHLAMNKSNGGLFVVKTSDSEVGRDALKNEVNILNSLNNSSPYIVQCLGTEYDDDQDNKLVHVFMEYMAGGSLADVLNKFGGSLDEDVVRLYTRQILLGLYDLHKHGIVHCDLKCKNVLLASSGNVKLADLGCAKRVENKAASCINLTNGGTPLWMAPEVLLNDDEKVVDFAADIWSLGCTVIEMATGRPPWADISNPIAAMFKIARGDEIPQFPVHFSREGFDFLRRCLVRDPSKRPTAQELLNHPFIISTTLTHHKHYSASSPAAVLDVHQFEDTDDDDD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24818g00001 302 SUPERFAMILY Protein kinase-like (PK-like) 7 279 IPR011009 -
Trme24818g00001 302 ProSiteProfiles Protein kinase domain profile. 7 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24818g00001 302 PIRSF ILK 6 287 - -
Trme24818g00001 302 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 272 - -
Trme24818g00001 302 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Trme24818g00001 302 CDD STKc_MAPKKK 6 269 - -
Trme24818g00001 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trme24818g00001 302 Gene3D Transferase(Phosphotransferase) domain 1 6 302 - -
Trme24818g00001 302 SMART serkin_6 7 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24818g00001 302 Pfam Protein kinase domain 9 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24818g00001 Trme-Chr24818 356 1263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24818g00001 7 290 MAP Kinase Kinase Kinase AT5G55090 43.945 3.66e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme24818g00001 Pkinase 3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24818g00001 K20716 - psat:127086258 449.899