Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme24816g00001 | AACACCAGGGAAACAGCGTTTGCCATCAGGAAGTTGCCCCTGATCAAAGCCAAGAGATACTTGGAAGATGTTTTGGCTCACAAACAAGCCATTCCTTTCCGCCGCTTTTGTCGTGGTGTTGGGCGGACAGCCCAAGCTAAGAACAGACATTCTAATGGGCAAGGACGCTGGCCTGCAAAGTCAGCTAAATTCATTCTTGATTTGCTTAAGAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTC | 445 | 0.4742 | NTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQA | 148 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme24816g00001 | 148 | CDD | Ribosomal_L22 | 1 | 124 | IPR001063 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme24816g00001 | 148 | NCBIfam | 50S ribosomal protein L22 | 1 | 127 | IPR005721 | GO:0003735|GO:0006412|GO:0015934 | |
| Trme24816g00001 | 148 | ProSitePatterns | Ribosomal protein L22 signature. | 100 | 124 | IPR018260 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme24816g00001 | 148 | FunFam | 60S ribosomal protein L17 | 1 | 148 | - | - | |
| Trme24816g00001 | 148 | Gene3D | Ribosomal protein L22/L17 | 1 | 148 | IPR036394 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme24816g00001 | 148 | PANTHER | 60S RIBOSOMAL PROTEIN L17 | 1 | 146 | IPR005721 | GO:0003735|GO:0006412|GO:0015934 | |
| Trme24816g00001 | 148 | Pfam | Ribosomal protein L22p/L17e | 1 | 125 | IPR001063 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme24816g00001 | 148 | SUPERFAMILY | Ribosomal protein L22 | 1 | 127 | IPR036394 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme24816g00001 | Trme-Chr24816 | 533 | 1263 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme24816g00001 | 1 | 146 | Cytoplasmic Ribosomal Protein Gene Family | AT1G27400 | 89.041 | 8.93e-97 | 275 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme24816g00001 | K02880 | - | cave:132179320 | 282.337 |