Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24812g00001 ATGGAGTGTCATAGAACCATAGGTCAGGTTGTACTGCCTGTGTTCTTCGATGTAGATCCGTCCGAAGTTCGTCGTCAAACCGGTGAGTTTGGTAAATCTTTTCAAAATGCATTGAACAGACTTTTAAAAGTGGATGAATTCATGGTGCCAAAGTGGAGAGATTCGCTTCGTGATGCTGCTGGCCTTGCTGGATTTGTTGTCCTAAATTCCAGGAATGAAAGTGAGGTGATAAAGGATATTGTTGAAAATGTTACGCATTTGCTTGACAAGACAGACTTGTTCATTGCTGATAATCCAGTTGGACTCGAATCTCGAGTGCAAGATATGATTCAACTTCTAGACACTCAACAATCAAATAATGTTCTACTATTAGGGATGTGGGGGATGGGTGGAATTGGCAAAACCACTATTGCAAAAGCCATTTATAATAAAATTGGACGCGATTTTGAAAGGAGGAGCTTTCTTGCAAATATTAGGGAG 480 0.4042 MECHRTIGQVVLPVFFDVDPSEVRRQTGEFGKSFQNALNRLLKVDEFMVPKWRDSLRDAAGLAGFVVLNSRNESEVIKDIVENVTHLLDKTDLFIADNPVGLESRVQDMIQLLDTQQSNNVLLLGMWGMGGIGKTTIAKAIYNKIGRDFERRSFLANIRE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24812g00001 160 Gene3D - 1 95 IPR035897 -
Trme24812g00001 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 159 IPR027417 -
Trme24812g00001 160 Gene3D - 96 160 IPR027417 -
Trme24812g00001 160 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 65 IPR035897 -
Trme24812g00001 160 Pfam NB-ARC domain 103 152 IPR002182 GO:0043531
Trme24812g00001 160 ProSiteProfiles TIR domain profile. 1 88 IPR000157 GO:0007165
Trme24812g00001 160 Pfam TIR domain 1 86 IPR000157 GO:0007165
Trme24812g00001 160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 160 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24812g00001 Trme-Chr24812 394 1217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24812g00001 1 160 WRKY Transcription Factor Family AT4G12020 28.750 8.58e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24812g00001 - - lja:Lj0g3v0331109.1 244.202