Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme247g00001 ATGAATATGGCTTTGAGTGTTACTAATGTTAATCACTTTTCAAACATTGCTGAAATTGATTCTGATAGAAGTGTTTGGAATGTTAAGGCCAAAATCCTCCGACTTTGGGAAGTGTCAGATTTTAATAGAAATACCCAACCTTTTTCAATTGAGATTGTTTTGGAAGATGTTGATGGTGGTTGTAGAATTCATGCTACGATCAAGAAAACTCTTATTTATAAGTTTAAAAATGAACTAATTCAAGGAAAGGTGTATAGTTTTGAAAAACTTGGGGTTTCAACTAACGGTGGTGCTTATCGGACTACAAGGCACCCTTACAAGCTAAATTTTCAGTATAGTACTTTGGTCCAAAGGCTAGCTAACTTTGAGATTCAGACATCTCCATTTGATTTTGTTCCAATAGCTGACATTATTGGTGGAGGTTATGACACAGATTACTTATGTGATGTTATTGGTGTATTGAAAGCTGTTGGCCAGGAACGTGAGATAACAAATCAAAATGGTTCAACTACGAAGCTTAATGTTATTGGCCTTGAGAATGATGGGAATAAAATTCAATGTACTTTGTTTGGGGCTTATGTTGATGAACTGAACACATTCCTTGCTGCTGGAGATATTAACAATGCTGTGGTGATCATTCAATTTGCAAAGGCAAAAAATTTTCAAGACAACATACACATCCAAAATTGCATGAATGCCTCTGTGTTGTACTTTAACTCAACCTGTGCAGAAAGTGTTGCATTGAGATCTAGCCTTCCTGCAAATGTGGATACTCCTTCTCCTCTGACATTGACCCAAATCAATGGTGAAGCTAGAGTTGAACCTATTGATGAGTTTTTGTACCAAACTCCAAGAACTACTTTGCAAGCTCTGAAAGATGCTACAGCTGGGTCTTATCATGTTGTTGGTGCTACTGTCAAAAAGATCTTGAATCCTGACAGTTTTTGGTATACTGCATGCGTATGCAACAAAGCTGTAATACCAGATTCCATGATGTTTTATTGTGAGAAGTGTAACAAGCATGTGGTTAGGGTGTATCCTAGGTTTTGCATAAAGGTTAGAGTGATTGATCACACAGATTCTGCTAATTTTGTCATATTTGATAGAGAGGCAACTTTGCTACTTGATACTTCATGTGCTGATTTGATACAAGGAATGGAAAATGCTGGGAATCTTGGAGTTATGCCTGCTGAACTTGAAACCTTGGTTGATAAGCATTGGTTGTTTAAGATTGAGGCAAAGCCAAATCAGAATCCCAAGTTTGAACAGTCTTTTAGGGTCAGAAAGATTTGCACTGATGCTAACATAATTCAACAATTTAAGAACAAGTGGGACAGGGAAGAAGCAACATTTCGCAAGAGTATTAATGAGTGTGGATCTCTAAGTACTTTGTGTAAAAAAGGGAAAGATGTTTTAATTGGTGGAACTTCAAATCTGTTAACTCAGGGTTGTGAAAGTTTGTCTGGAAGTGATGTTAAGGGAAAAGGAATTCTGCTTGAAGGAACACCAGTTGGAGTTTCTCAAGATTTAATGGGAAAATTTTCCACTGCTGTTGTCAATCTTGGTGATGATGTCACGCCTACCATGTTAGCTCAGGGTTGTGAGAGTTTGTCTGGAAGTGATGTTAAGGGAAAAGGAATTCTGCTTGAAGGAACACCAGTTGGAGTTTCTCAAGATTTAATGGGAAAATTTGCCACTGCTGTTGTCAATCTTGGTGATGATGTCACGCCTACTATGTTAATCGCCAATACTCCTTCATCTGACACTGAAACTACTCCTCAGTCTACTGTTAATGTTGAAGGTGCATCAACTGTTCGCGTGGTGAGCATGGGAAAATTTGCCACTGCTGCTGTCAATCTTGGTGATGATGTTATGCCTACCATGTTAATGGCCAAGACTTCTTCATGTGACACTGTTAAGGTTGAAGATGCATCAACTGTTCGCGTAGCAGTCCAGCGGAAGAAATCTGGGGGTAGGAGAGTTTCACCTCAGATTATCGAAGAAGATGAAGATGAGATTTCTCCAACTGAAGATTCACCAATTCAGTGCGTTAAAGGGCAGCAGAAGAAATCAGTGGCAAAGAGAGTTTCACCGGTGGCAATACAAGAAGATGAAGATGACAACACCCCAATCAAGCTGCTTAAGAAGGCTGTGAAGATTGAAAAGATTCCATAG 2175 0.388 MNMALSVTNVNHFSNIAEIDSDRSVWNVKAKILRLWEVSDFNRNTQPFSIEIVLEDVDGGCRIHATIKKTLIYKFKNELIQGKVYSFEKLGVSTNGGAYRTTRHPYKLNFQYSTLVQRLANFEIQTSPFDFVPIADIIGGGYDTDYLCDVIGVLKAVGQEREITNQNGSTTKLNVIGLENDGNKIQCTLFGAYVDELNTFLAAGDINNAVVIIQFAKAKNFQDNIHIQNCMNASVLYFNSTCAESVALRSSLPANVDTPSPLTLTQINGEARVEPIDEFLYQTPRTTLQALKDATAGSYHVVGATVKKILNPDSFWYTACVCNKAVIPDSMMFYCEKCNKHVVRVYPRFCIKVRVIDHTDSANFVIFDREATLLLDTSCADLIQGMENAGNLGVMPAELETLVDKHWLFKIEAKPNQNPKFEQSFRVRKICTDANIIQQFKNKWDREEATFRKSINECGSLSTLCKKGKDVLIGGTSNLLTQGCESLSGSDVKGKGILLEGTPVGVSQDLMGKFSTAVVNLGDDVTPTMLAQGCESLSGSDVKGKGILLEGTPVGVSQDLMGKFATAVVNLGDDVTPTMLIANTPSSDTETTPQSTVNVEGASTVRVVSMGKFATAAVNLGDDVMPTMLMAKTSSCDTVKVEDASTVRVAVQRKKSGGRRVSPQIIEEDEDEISPTEDSPIQCVKGQQKKSVAKRVSPVAIQEDEDDNTPIKLLKKAVKIEKIP 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme247g00001 724 SUPERFAMILY Nucleic acid-binding proteins 13 120 IPR012340 -
Trme247g00001 724 PANTHER OS03G0429900 PROTEIN 14 416 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme247g00001 724 SUPERFAMILY Nucleic acid-binding proteins 129 257 IPR012340 -
Trme247g00001 724 Gene3D - 123 258 IPR012340 -
Trme247g00001 724 Gene3D - 13 121 IPR012340 -
Trme247g00001 724 CDD RPA1_DBD_A_like 28 116 - -
Trme247g00001 724 MobiDBLite consensus disorder prediction 668 688 - -
Trme247g00001 724 CDD RPA1_DBD_B_like 149 253 - -
Trme247g00001 724 Gene3D - 280 442 IPR012340 -
Trme247g00001 724 Pfam Replication factor-A C terminal domain 300 432 IPR013955 -
Trme247g00001 724 CDD RPA1_DBD_C 299 430 IPR047192 -
Trme247g00001 724 Pfam Domain of unknown function DUF223 51 147 IPR003871 -
Trme247g00001 724 SUPERFAMILY Nucleic acid-binding proteins 284 433 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme247g00001 Trme-Chr247 864 4117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme247g00001 48 430 Core DNA Replication Machinery Family AT5G08020 23.559 1.31e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme247g00001 - - tpra:123915358 734.947