Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2479g00001 ATGCCAGAAATGAAAGATAGAGAAACTGGTCAACCTTTAGCATTTCCTGAAGCTGTGCTTTTAACAAATCCGTCTGATTCACAATTTAAAGGAGAAGTGGATGATAAATACCAATACTCAACTGAGAACCAATACAACCAAGTAAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGCTTCTGGATCATAACACCAAGTAATGAGTTCCGAAATGGTGGGCCTGTTAAGCAAGACCTCACATCTCATGTTGGCCCAATTTGCCTCTCG 273 0.4139 MPEMKDRETGQPLAFPEAVLLTNPSDSQFKGEVDDKYQYSTENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLS 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2479g00001 91 Pfam Rhamnogalacturonate lyase family 1 33 IPR010325 -
Trme2479g00001 91 Gene3D - 17 88 IPR014718 GO:0030246
Trme2479g00001 91 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 91 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2479g00001 1 91 Polysaccharide Lyase AT2G22620 68.132 2.37e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2479g00001 K18195 - gmx:100801633 148.288