Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24762g00001 ATGTTGGCCATATCCCCTCCTTTGTTCTCAACAATTGGATGGCCCTTTGAAGGTACCATAAGCCATAATCAGCATAAGGATCACTTCTACAAAGACATTACTATTGATCAATTATTTCATATTAAAAATCAAGTTGAGGCTGAAAATTCAACTGATCCATCACAAGCCATAAGCTGTGACCTTAGTATGGTCAAGAAGCTTGTCCATAATGCTAGTGAGCGTGATCGCCGCAAAAAGATCAATAATTTGTATTCTTCAATTCGTTCTCTTCTTCCTGTTTCAGATCAAATG 291 0.3746 MLAISPPLFSTIGWPFEGTISHNQHKDHFYKDITIDQLFHIKNQVEAENSTDPSQAISCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQM 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24762g00001 97 Gene3D - 60 97 IPR036638 GO:0046983
Trme24762g00001 97 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 97 IPR011598 GO:0046983
Trme24762g00001 97 Pfam Helix-loop-helix DNA-binding domain 65 92 IPR011598 GO:0046983
Trme24762g00001 97 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 94 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24762g00001 1 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 39.450 3.75e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme24762g00001 HLH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24762g00001 - - vvi:100262373 102.834