Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme246956g00001 ATGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGAGGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTGAAGTTTGCTAGTAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTAGTGAGGATAATGAC 252 0.3968 MKEHEIFVGGLDREATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKVYAFVKFASKEHAKKALSEMKNPVIHGKRCGTAPSEDND 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme246956g00001 84 CDD RRM_SF 6 75 - -
Trme246956g00001 84 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 82 IPR000504 GO:0003723
Trme246956g00001 84 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 2 84 - -
Trme246956g00001 84 Gene3D - 1 84 IPR012677 -
Trme246956g00001 84 SUPERFAMILY RNA-binding domain, RBD 4 77 IPR035979 GO:0003676
Trme246956g00001 84 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 74 IPR000504 GO:0003723
Trme246956g00001 84 SMART rrm1_1 5 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme246956g00001 Trme-Chr246956 1 336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme246956g00001 6 73 Eukaryotic Initiation Factors Gene Family AT1G49760 29.412 4.80e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme246956g00001 - - tpra:123920681 169.859