Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24685g00001 ATGACGAGTGGGTTTACGGAAAAGCTAGGAGAAGGAGCTCACGGAACTGTGTTCAAAGGAAAACTCTCTAGTGAGATTCTCGTGGCTGTGAAAGTGCTCAACAATACACCGGGAGAAGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGCAAAATCCACCACATCAACGTGGTTCGTTTGCTTGGCTTTTGTGCAGATGGAATCCATCGTGCTCTTGTATACAATTTGTTTTCAAATGGGTCACTACAGAGCTTCATATTTCCACCCGATAACAAGGATCACTTCATGGGATGGGAGAAGTTGCACCAAATTAGTCTTGGTATAGCAAAAGGAATCGAGTATCTTCATGAAGGTTGTAGCCATCCGATCCTTCACTTTGACATCAACCCTCACAATGTATTGCTAGACGATACCTTCACTCCTAAAATTTCAGATTTTGGTCTCGCCAAATTATGTTCTAAGAATCTTAGTGTTGTGTCCATGACAGCTGCTAGGGGAACCATGGGATATATGGCGCCTGAAGTTTTGTCCCGAAATTTTGGTAATGTTTCTCTTAAGTCTGATATTTACAGTTATGGCATGTTATTGCTAGAAATGGTTGGAGGAAGGAAGAATGTTGATTCGTCATCCACTGAAAATTTTCATATTTTATACCCTGAATGGATCCATAACTTATTGGAAGGAGACATCCATATTAATATTGAAGAAGGAGGTGATGTTAGAATTGCAAAGAAACTCGCAATTGTCGGACTTTGGTGTATTCAATGGCAGCCAATGAATCGTCCATCCATAAAAACTGTCATACAAATGTTGGAAACAATAGATTACAATAAGTTAACTTTTCCTCC 851 0.3995 MTSGFTEKLGEGAHGTVFKGKLSSEILVAVKVLNNTPGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFSNGSLQSFIFPPDNKDHFMGWEKLHQISLGIAKGIEYLHEGCSHPILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNLSVVSMTAARGTMGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDSSSTENFHILYPEWIHNLLEGDIHINIEEGGDVRIAKKLAIVGLWCIQWQPMNRPSIKTVIQMLETIDYNKLTFPP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24685g00001 284 ProSiteProfiles Protein kinase domain profile. 3 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24685g00001 284 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24685g00001 284 FunFam PR5-like receptor kinase 78 280 - -
Trme24685g00001 284 SUPERFAMILY Protein kinase-like (PK-like) 6 277 IPR011009 -
Trme24685g00001 284 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme24685g00001 284 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trme24685g00001 284 PIRSF ILK 5 281 - -
Trme24685g00001 284 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 284 IPR045874 GO:0004672
Trme24685g00001 284 Gene3D Transferase(Phosphotransferase) domain 1 78 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24685g00001 Trme-Chr24685 416 1266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24685g00001 1 284 Receptor kinase-like Gene Family AT1G66910 46.735 4.43e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme24685g00001 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24685g00001 - - gmx:100813531 488.804