Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24683g00001 TGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGAGCTAAAAGAGGATTACTTTTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTTACGATTGGTAAACCTGTTGTGACAAAGATCGTCACTCCCACATACATAGAAAATGCAAATTCAAGCCAAACTAAAATGAATGCTTCGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTAGAATCAAACTCAGTACATCCAGTTGGGAAAGCAATTGTGGATGCCGCTCAGGCAGTTAATTGTCATGACGCTAAGGTAACAGATGAAACATTCCTGGAAGAACCTGGATCTGGTGTTGTTGCAACCGTAAATAACAAAAAGGTTTCCGTTGGGACATTGGAATGGATAACCAG 446 0.4283 CPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGKPVVTKIVTPTYIENANSSQTKMNASSDIEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHDAKVTDETFLEEPGSGVVATVNNKKVSVGTLEWIT 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24683g00001 148 PANTHER ATP7, ISOFORM B 1 147 - -
Trme24683g00001 148 Pfam haloacid dehalogenase-like hydrolase 39 148 - -
Trme24683g00001 148 Gene3D - 48 148 IPR023299 GO:0000166
Trme24683g00001 148 ProSitePatterns E1-E2 ATPases phosphorylation site. 45 51 IPR018303 -
Trme24683g00001 148 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 45 147 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24683g00001 Trme-Chr24683 131 1266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24683g00001 1 142 Primary Pumps ATPases AT1G63440 45.890 6.79e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24683g00001 K17686 - gmx:100796210 248.825