Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2465g00001 ATGATACTGCAAATTCTTTGTGACGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACATGCGAAAGGAATCAGAGGTCGGTATGGATTATGATGCAGAAGATATCCTTCCTGCAGAAATGGGACCGAGAAAAGTTCATCCAAGATATGCCAGGACCTCTTTTTGTGAGGATAAAGAAGCTATCAAATTGGTTTCAGAAAGCACCGAGGATGGGGATTTTGATAGAAATGGAGATGAGTGTCGCCTCTGTGGTATGGATGGAACCCTTCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGCTTAACATTGGCAACAATGAAGTTTGTCTTAGATATTACAATCAGAAGGACATCCCTAAAGTTGTCCAACTGCTTTATGAATCCACGCTGCATAGGCCAATGTACTATGGTATTTGCATGGCAGTGCTACAATACTGGAATATTTCAGAAAACTTCTTGCCTCTTCCTGCTTCAACTGAAACAAATATGAAGGATGAGACAGAATTTTCTGCCCCTTTACTTCCTCCTCCAAGTGAAGACAACCATAAACCCGTTAGTTTGGTCAAGGGAGAGAATTCTCCAACCACTGCGAGTTTGATTCACAATGATAATAGGGTGCCTTCTCTTGATGCTTTGCAAGTTAGCACTCAAAGTCCTGCTCTTCATAGCAGTGGCATTGCTAGGAGTGAAGAGGGCCTTACTGTGGTTAATAACATTGCTGCGGAAACTAGGATAGAGGCAATAACTTCAGCTGGTTCTGTTAGCCATCAGTCCGACCTGAACTTGCAGAACTCTGTCAATATGTCAACTACAGTAGATGCTGCTAATTGCTCTTTGGTGAAAAGTCAATTAAGTAATTGCGGCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTTGCTAAACAAAGAAAATGCCCCAGTAGGCTTTGGGAAGTGTGAAAGCAATGCAAATGATGATTTTTGTTACTTTGGTTTCTCCTATAAACCCACATCATACATAAACTGCTATATGCATGGTGACTTTTCTGCATCAGCAGCTGCCAAATTTGCCATGATTTCTTCAGAGGAGTCTAAGTCAGAAGGTCATGCATCAGACAGCCATAAAAAAACGATATCTGCCTATACTTACTTGCAAGCAAAAGCATTCTCACTAGCAGCATCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCCGTGGAGGTTCCAAGAGAAAGGTGTGGTTGGTGCCTTTCCTGTAAAGCCAATGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCCACAAAAAGTGCCATGAGAATCCTTGCTAAATTTTCTCCTTTAAGGAGTGGAGATGGAAGTTTTCCTAGCACCATTGCAACATACATTTTATATATGGAGAAATGTTTACATGGTTTAGTCGTTGGGCCCTTCATAAATGCAAGCTATAGAAACAACTGGCGTAAGCAAGTGGAACAGGCCACAACACTTGGTGCTCTCAAGCCACTTCTACTTGAT 1527 0.4152 MILQILCDDVLESEELKTEMNMRKESEVGMDYDAEDILPAEMGPRKVHPRYARTSFCEDKEAIKLVSESTEDGDFDRNGDECRLCGMDGTLLCCDGCPSAYHSRLNIGNNEVCLRYYNQKDIPKVVQLLYESTLHRPMYYGICMAVLQYWNISENFLPLPASTETNMKDETEFSAPLLPPPSEDNHKPVSLVKGENSPTTASLIHNDNRVPSLDALQVSTQSPALHSSGIARSEEGLTVVNNIAAETRIEAITSAGSVSHQSDLNLQNSVNMSTTVDAANCSLVKSQLSNCGHANDMGLPLNFSLLNKENAPVGFGKCESNANDDFCYFGFSYKPTSYINCYMHGDFSASAAAKFAMISSEESKSEGHASDSHKKTISAYTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCLSCKANVASKRGCMLNHALISATKSAMRILAKFSPLRSGDGSFPSTIATYILYMEKCLHGLVVGPFINASYRNNWRKQVEQATTLGALKPLLLD 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2465g00001 509 MobiDBLite consensus disorder prediction 172 205 - -
Trme2465g00001 509 SUPERFAMILY FYVE/PHD zinc finger 56 103 IPR011011 -
Trme2465g00001 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 125 IPR013083 -
Trme2465g00001 509 PANTHER PHD FINGER FAMILY PROTEIN 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2465g00001 Trme-Chr2465 579 2499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2465g00001 270 509 PHD Transcription Factor Family AT5G35210 45.082 7.84e-47 173