Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24623g00001 ATGTGGGTATCGTCTGGACGCCGGACATGCCTTCGATCTGAAGTGCCAGTGGGAATTTTTGAGATTCTTTCGTTGTCCGGCTCATTTGTGCCAACTGAGAATGGATTGACAAAGAGCAGAGCTGGTAGAATGAGTGTCTCATTGGCGGGTCCAAATGGTCGTGTTTTTGGGGGTGCACTGGCTGGTTTACTTGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCGAGTTTTCAACCAGAGCAGCAGAAACCAAAGAAGCAAAGGACCGATTATACGTCACCAACTGCCCCTCCTACATCATCTCATATTAATAATCATGTTTCTGCTGAACAATTGAAACCTATCATGTCACCGGCCGGCTTTAACTTTGCTTCTTTCGGCAATGGCCAAGGCTCTGGCAACTCATCATCATC 413 0.477 MWVSSGRRTCLRSEVPVGIFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFQPEQQKPKKQRTDYTSPTAPPTSSHINNHVSAEQLKPIMSPAGFNFASFGNGQGSGNSSSS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24623g00001 138 Gene3D - 8 94 - -
Trme24623g00001 138 ProSiteProfiles PPC domain profile profile. 1 99 IPR005175 -
Trme24623g00001 138 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 114 IPR039605 GO:0003680
Trme24623g00001 138 CDD DUF296 18 77 IPR005175 -
Trme24623g00001 138 SUPERFAMILY AF0104/ALDC/Ptd012-like 18 84 - -
Trme24623g00001 138 Pfam Plants and Prokaryotes Conserved (PCC) domain 18 78 IPR005175 -
Trme24623g00001 138 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24623g00001 Trme-Chr24623 1 1125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24623g00001 18 88 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 69.333 7.83e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24623g00001 - - mtr:11422923 152.91