Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24550g00001 ATGCCAGACAGCAACATCGAACAATTATGGGAAGGCATCCAGTGTCTACCCTGTTTGAAAAGGATGGATCTGAGCAACTCCAAAAATCTGAAGATGACTCCATGTTTTGATGGAATCCTAAACCTGGAGCGGCTAGATCTTACAGGATGCATAAACTTGCTGCAGGTGCATCCATCAATTGGACTTCTTTCTGAACTTGTATTCTTGAGTTTGCAGAAATGTAGTAGTCTAGTCCGCCTTGATTTTGGCCGTTCATCAAGGCTATGGTCTCTAAGAGTCTTACGTCTCTCTGGTTGCACAAAACTTGAAAGCACTCCAGATTTCACTGGAGCACTAAATCTTGAGTACCTTGATGTGGATCAATGCAGAAGTTTATCGACATTTCATGGATCTCTTGCAAAGCTTAGAGTCTTAAGTTTGAGAGACTGCACAAAGCTTGTTAGACTATCTGATAGCCTTGATAACATGACATCTCTGATAACTTTGGAACTATACGGCTGCATGAAATATCAATATCTGCCTGTCAATTCTGCTATGGGATCTTTGATTTTTCTCGACTTAAGCTTTTGCAATATTTCTATAGTACCTGATGCTATTGGAGAATTAAGGGGTTTAGAGAGACTAAATTTACAGGGGAATAACTTTACTAGACTACCTTCTACCATCCAAAGACTTTACAGTCTAGCATATTTAAACTGTCACATTGTCATAAGCTTCAACATTTGCCTTCGGCTCCAACAATAA 744 0.3965 MPDSNIEQLWEGIQCLPCLKRMDLSNSKNLKMTPCFDGILNLERLDLTGCINLLQVHPSIGLLSELVFLSLQKCSSLVRLDFGRSSRLWSLRVLRLSGCTKLESTPDFTGALNLEYLDVDQCRSLSTFHGSLAKLRVLSLRDCTKLVRLSDSLDNMTSLITLELYGCMKYQYLPVNSAMGSLIFLDLSFCNISIVPDAIGELRGLERLNLQGNNFTRLPSTIQRLYSLAYLNCHIVISFNICLRLQQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24550g00001 247 Pfam Leucine Rich Repeat 1 14 IPR011713 -
Trme24550g00001 247 SUPERFAMILY L domain-like 3 233 - -
Trme24550g00001 247 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 88 175 - -
Trme24550g00001 247 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Trme24550g00001 247 Gene3D Ribonuclease Inhibitor 111 178 IPR032675 -
Trme24550g00001 247 Gene3D Ribonuclease Inhibitor 179 245 IPR032675 -
Trme24550g00001 247 Pfam Leucine Rich Repeat 205 220 IPR001611 GO:0005515
Trme24550g00001 247 Pfam Leucine Rich Repeat 41 60 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24550g00001 Trme-Chr24550 191 1196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24550g00001 1 208 WRKY Transcription Factor Family AT4G12020 34.562 1.88e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24550g00001 - - tpra:123891889 314.309