Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme244g00001 ATGGGATCTGAAACTATGGTTCCAGAATGGGCATCGGAGCCATGCATAATGGGAATTGACGAAGCTGGAAGAGGTCCTGTTCTTGGTCCTATGGTCTATGGTTCCTTATACTGTCCTCGCTCCTACCAGAATACTCTAGCTACTCTCAGTTTCGCAGATTCTAAGACACTGAAAGAAGACAAGAGGGAAGAATTATTTGAATCTTTGAAAACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGATCCTAAGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGATTCTGCCATGGGTCTCGTTGATCGGGCGCTCAAAATGGGAGTGCTTCTAACTGAGGTCACCCACCATTTATATCCACACCCAATAGCGCTGGACATGAGAGCGTGTATTAAGAGTCTCACATCAAATGTTTATATTGATACAGTTGGAGATCCGGGGAAATATGAGACGAAACTTTCTAAAAAATTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCTAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTGTGAGAGAATGGGTGCTTGATGAGACTGCTGATAACATGCACAGGAATTTCGGCTCTGGGTATCCTGGAGATCCTACAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGTTTTCCAACATTGGTTCGGTTTAGTTGGGGAACTTGCAGCTCATATTTTAAAGGTGGTGCTGAAGTCTTATG 788 0.4213 MGSETMVPEWASEPCIMGIDEAGRGPVLGPMVYGSLYCPRSYQNTLATLSFADSKTLKEDKREELFESLKTNDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRALKMGVLLTEVTHHLYPHPIALDMRACIKSLTSNVYIDTVGDPGKYETKLSKKFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETADNMHRNFGSGYPGDPTTKSWLEHHKHSIFGFPTLVRFSWGTCSSYFKGGAEVL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme244g00001 262 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 261 IPR001352 GO:0003723|GO:0004523
Trme244g00001 262 FunFam Ribonuclease 212 259 - -
Trme244g00001 262 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 260 IPR024567 GO:0004523
Trme244g00001 262 SUPERFAMILY Ribonuclease H-like 15 255 IPR012337 -
Trme244g00001 262 Gene3D - 2 210 IPR036397 GO:0003676
Trme244g00001 262 Gene3D Ribonuclease hii. Domain 2 211 260 IPR023160 GO:0004523
Trme244g00001 262 CDD RNase_HII_eukaryota_like 17 260 - -
Trme244g00001 262 Pfam Ribonuclease HII 17 125 IPR024567 GO:0004523
Trme244g00001 262 Pfam Ribonuclease HII 145 251 IPR024567 GO:0004523
Trme244g00001 262 NCBIfam ribonuclease HII 16 253 IPR004649 GO:0004523|GO:0016070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme244g00001 Trme-Chr244 792 2283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme244g00001 1 261 Core DNA Replication Machinery Family AT2G25100 62.452 8.04e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme244g00001 K10743 - mof:131166371 403.675