Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24468g00001 ATGAAGCCCCTGCCACTTAAAGCATCAAGGGACATCCTAAGATTGATGCATCATACTTACCGGAACCAAGGATTTCAATTGTTTGTGAGTTTCTTTGAAATATATGGCGGGAAGCTATATGATCTCCTTAACGAGAGAAAAAAGCTTTGCATGAGGGAGGATGGTAAGCAGCAAGTTTGCATTGTTGGTTTGCAAGAGTACCGAGTTGCAGATGTGGAGAACATCAAAGACCTGATTGAGAAAGGAAGTGCCACAAGAAGTACAGGAACCACAGGTGCAAATGAGGAATCTTCACGGTCTCATGCAATACTTCAACTTGCTATCAAGAGGTCAGTTGATGGCAATGAATCCAAACCTCCCCGACTTGTTGGCAAGCTCTCCTTCATAGATCTTGCTGGAAGTGAACGTGGAGCGGATACCACTGACAATGACAAACAGACAAGAATAGAAGGGGCTGAAATCAACAAGAGCTTACTCGCCCTAAAGGAATGCATTAGAGCTCTTGATAACGACCAAGGACACATCCCTTTCAGGGGAAGTAAACTGACTGAAGTTTTGAGAGATTCTTTTGTTGGGAATTCCCGTACTGTTATGATATCATGCATATCACCAAGCTCTGGTTCATGTGAGCACACTCTGAATACATTAAGATACGCTGACAGGGTGAAAAGCCTGTCAAAAGGGAACAACTCGAAGAAGGATGTTTTATCATCAAATTTCAACCTTAAAGAATCAATTACAGTTCCCTTATCTTCTGTTACTGCACCG 768 0.4258 MKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLNERKKLCMREDGKQQVCIVGLQEYRVADVENIKDLIEKGSATRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSNFNLKESITVPLSSVTAP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24468g00001 256 Pfam Kinesin motor domain 8 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 Gene3D Kinesin motor domain 4 224 IPR036961 -
Trme24468g00001 256 ProSitePatterns Kinesin motor domain signature. 124 135 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trme24468g00001 256 PRINTS Kinesin heavy chain signature 125 143 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 PRINTS Kinesin heavy chain signature 91 108 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 PRINTS Kinesin heavy chain signature 175 196 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 SMART kinesin_4 1 231 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 ProSiteProfiles Kinesin motor domain profile. 1 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme24468g00001 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 225 IPR027417 -
Trme24468g00001 256 PANTHER KINESIN-RELATED PROTEIN 6 2 252 IPR027640 GO:0003777|GO:0007018
Trme24468g00001 256 FunFam Kinesin-like protein 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24468g00001 Trme-Chr24468 1 1214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24468g00001 7 225 Calmodulin-binding Proteins AT5G65930 36.323 1.34e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24468g00001 K10393 - gmx:100810966 484.952