Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24464g00001 ATGAATGATGGGTGTGTTCCACTTATGGAATTCGAACAAGATCCTGCGCAGATTCTTGATGCAATGATGCCACTTTATTTGAATAGTCAAGTTTTGAAAGCATTGCAAGAATCATTGGCTAGTGAACTTGCTGCTAGAATGGGTGCTATGTCTAATGCAACTGATAATGCTGTTGAGTTGACGAAAGAGCTTTCTATTGCTTATAATCGAGAAAGACAAGCTAAGATTACTGGTGAGATTTTGGAGATTGTGTCCGGAGCTGAGGCGTTGAAACCGATTGATTGA 285 0.4 MNDGCVPLMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSIAYNRERQAKITGEILEIVSGAEALKPID 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24464g00001 94 FunFam ATP synthase gamma chain, chloroplastic 2 90 - -
Trme24464g00001 94 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 8 90 IPR035968 GO:0015986|GO:0045261|GO:0046933
Trme24464g00001 94 ProSitePatterns ATP synthase gamma subunit signature. 76 89 IPR023632 -
Trme24464g00001 94 PRINTS ATP synthase gamma subunit signature 68 89 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme24464g00001 94 PRINTS ATP synthase gamma subunit signature 37 56 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme24464g00001 94 PANTHER ATP SYNTHASE GAMMA CHAIN 7 90 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme24464g00001 94 Pfam ATP synthase 9 90 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trme24464g00001 94 Gene3D ATP synthase, gamma subunit, helix hairpin domain 7 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24464g00001 Trme-Chr24464 93 377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24464g00001 7 91 Primary Pumps ATPases AT1G15700 83.529 1.87e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24464g00001 K02115 - rcu:8282943 143.665