Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2445g00001 ATGGAAGTGGCCGCCGTTGACTCAAAATTAATCGGACAGCTAAGAATGGGACAGCAGACAATAAATTGGAGTCGATCCGGATCCGCTAAACGGCACCCCAACTGCAAACGCCGCAAATTTCAACCCGTATCTACCGCAACTTCTACTACTACTACTACCACCACCACTGCTGCTACTGCTACCACTAATAGCGATTGGTACGATGTGTACCTGAGTTTCTGCGACGATGACACACTTTCTTTTGCTTTGGGTATCTATAAGGGTCTTAGTTTAAAACGAATAGATGTTTTCTGGGAAAATGAGGAGATTAGAAGTGGAGATCATGGAGAAACAGCAACAGTGCTGGATGTAATTGGAAATTGCAAACTTGTTTTAATTGTATTTTCAACAAATTATTTTAATTCAAGACGGTGTCTTCAAGAATTGGAAAAAATAACTGAGTGTTGTCGAACCACAGATAGTCTTATGGTTCTGACTTTCTTTTATGATGGTGTCCGTCTCTCGTTCGGAGTTTTAAAGAGAGGTATGTTTGGAGGAGAAGCTTATCATGAATTTCTTGATAGAATCTGTGAAGAAGAAATCTCCCAACAGGGGGATAAGTTCATGAGTTGGGTGGCACCAATAAGTCATAATAAATCTGCCACATATGCAGGAACAACATTTTTCGGACACAAATTCATGCCAGGGGAGGAAAGTGATCATATTGATATTGTAGCTGACCTTATTATTCGTGCGGTAAATGCATTTTGTGGAAGTCGTGAATGGTTTGGTGAAGGTAGCAAAGTAATCATCACCACAAGAGATAGAAAACTACTTAAGGAGCATGGAGTTGACCATATATACAAAGTGAAAGAACTGGACGAAAGTGAATCACTTGAGCTTTTTAATTCAAAAGCATTCAGCCAAGCAACTTCTCAAGAAGCTTTTGCTGAACTTTCTAGACAGGTAGTTTCTTATTCTAGGGGATTGCCTCTTGCTCTTAAAGAACTTGCGTCTGTATTGTATGGGAGAACAATATCTAACTGGGAGTCTGTGTTGTATATGCTCAAAATGTTTCCCCAAGAAGATGTGCAAAGAATTCTAGAAGATAGTTTTAATGATTTGAATGATGAAGAGAAACAAGTATTCCTTGATATTGCATATTTCTTTATCGGGAAGAACCAAAATGATGTGCTCCAAACATTAAATAGGTCAACACAACGCATAAGTACTCTTCAAATAAGTCTCCTTGAAGACAAGAGCCTTTTAACCATTGATGAGAATAACATGCTTCAAATGCATGTTTTGCTACAAGCTACAGCAAGATATATTATTTTGAGGGAACCAAGTAATAAGCCTGATCAG 1344 0.3862 MEVAAVDSKLIGQLRMGQQTINWSRSGSAKRHPNCKRRKFQPVSTATSTTTTTTTTAATATTNSDWYDVYLSFCDDDTLSFALGIYKGLSLKRIDVFWENEEIRSGDHGETATVLDVIGNCKLVLIVFSTNYFNSRRCLQELEKITECCRTTDSLMVLTFFYDGVRLSFGVLKRGMFGGEAYHEFLDRICEEEISQQGDKFMSWVAPISHNKSATYAGTTFFGHKFMPGEESDHIDIVADLIIRAVNAFCGSREWFGEGSKVIITTRDRKLLKEHGVDHIYKVKELDESESLELFNSKAFSQATSQEAFAELSRQVVSYSRGLPLALKELASVLYGRTISNWESVLYMLKMFPQEDVQRILEDSFNDLNDEEKQVFLDIAYFFIGKNQNDVLQTLNRSTQRISTLQISLLEDKSLLTIDENNMLQMHVLLQATARYIILREPSNKPDQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2445g00001 448 SUPERFAMILY Toll/Interleukin receptor TIR domain 63 168 IPR035897 -
Trme2445g00001 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 67 176 IPR044974 GO:0006952
Trme2445g00001 448 SMART till_3 66 211 IPR000157 GO:0007165
Trme2445g00001 448 Gene3D - 285 369 IPR042197 -
Trme2445g00001 448 MobiDBLite consensus disorder prediction 23 53 - -
Trme2445g00001 448 Pfam TIR domain 67 163 IPR000157 GO:0007165
Trme2445g00001 448 SUPERFAMILY "Winged helix" DNA-binding domain 356 440 IPR036390 -
Trme2445g00001 448 ProSiteProfiles TIR domain profile. 65 209 IPR000157 GO:0007165
Trme2445g00001 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 379 IPR027417 -
Trme2445g00001 448 Pfam NB-ARC domain 257 368 IPR002182 GO:0043531
Trme2445g00001 448 Gene3D - 66 247 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2445g00001 Trme-Chr2445 313 2592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2445g00001 245 441 WRKY Transcription Factor Family AT5G45050 36.946 3.98e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2445g00001 - - mtr:11411578 251.136