Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24429g00001 ATGGCACCTTCAACTAAAGATGTTGATAAAGATATCAATGGTGATACTGGCTCCAAATTCATTTTGGTGGACAAATCACCAGAGTTTTCGTATGAAGAACTTGCCAATGCTACAGATAACTTCAGTTTGGCTAACAAAATAGGTCAAGGTGGTTTTGGCGAGGTCTACTATGGTGAGCTGAGAGGCCAGAAAATTGCTGTCAAGAAGATGAAGATGCAAGCAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACACTTGATTGGATATTGTGTCGAGGGATATCTATTCCTTGTCTATGAATACATGGAAAATGGAAACTTAAGCCAAAATCTACATAGTTCAGCGAAAGAACCGATGACTTGGTCTACAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGACTCGA 437 0.4005 MAPSTKDVDKDINGDTGSKFILVDKSPEFSYEELANATDNFSLANKIGQGGFGEVYYGELRGQKIAVKKMKMQATREFLSELKVLTSVHHWNLVHLIGYCVEGYLFLVYEYMENGNLSQNLHSSAKEPMTWSTRVQIALDVARGL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24429g00001 145 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 145 IPR044812 GO:0019199|GO:0045087
Trme24429g00001 145 ProSitePatterns Protein kinases ATP-binding region signature. 47 69 IPR017441 GO:0005524
Trme24429g00001 145 Gene3D Transferase(Phosphotransferase) domain 1 21 145 - -
Trme24429g00001 145 FunFam LysM receptor kinase 2 20 111 - -
Trme24429g00001 145 SUPERFAMILY Protein kinase-like (PK-like) 19 145 IPR011009 -
Trme24429g00001 145 SMART tyrkin_6 41 145 IPR020635 GO:0004713|GO:0006468
Trme24429g00001 145 Pfam Protein tyrosine and serine/threonine kinase 43 145 IPR001245 GO:0004672|GO:0006468
Trme24429g00001 145 ProSiteProfiles Protein kinase domain profile. 41 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24429g00001 Trme-Chr24429 8 965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24429g00001 17 145 Receptor kinase-like Gene Family AT3G21630 72.093 6.25e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme24429g00001 PK_Tyr_Ser-Thr 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24429g00001 - K13429 vvo:131616003 205.682