Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24428g00001 ATGGATGGAAAAGAGTCTATTAAAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAACAGAACAGCTTTTGATGGTGATATGTATCAGCTAAAAAGTTTGATTCGAGCTGGAGCTGATCCCAAGAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCGGCATGCAGAGGATACGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCTCTACTTGAAGCAGTTAAGAGTGGACACGATCGGATTGCTGCTTTACTTGTTAGAGAAGGGGCCTCTTTGAAGATAGACNATGGTGGTAGTTTTTTATGCACATCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGCATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTACCAAAGACAG 563 0.3961 MDGKESIKGKQLESDITFHIGKLESELALKVNRTAFDGDMYQLKSLIRAGADPKKTDYDGRSPLHLAACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGHDRIAALLVREGASLKIDXGGSFLCTSVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24428g00001 187 SUPERFAMILY Ankyrin repeat 35 187 IPR036770 -
Trme24428g00001 187 PRINTS Ankyrin repeat signature 60 75 IPR002110 GO:0005515
Trme24428g00001 187 PRINTS Ankyrin repeat signature 172 186 IPR002110 GO:0005515
Trme24428g00001 187 Gene3D - 123 187 IPR036770 -
Trme24428g00001 187 Gene3D - 24 122 IPR036770 -
Trme24428g00001 187 Pfam Ankyrin repeats (3 copies) 126 187 IPR002110 GO:0005515
Trme24428g00001 187 Pfam Ankyrin repeats (3 copies) 41 120 IPR002110 GO:0005515
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat region circular profile. 156 187 - -
Trme24428g00001 187 SMART ANK_2a 59 88 IPR002110 GO:0005515
Trme24428g00001 187 SMART ANK_2a 123 152 IPR002110 GO:0005515
Trme24428g00001 187 SMART ANK_2a 156 185 IPR002110 GO:0005515
Trme24428g00001 187 SMART ANK_2a 92 121 IPR002110 GO:0005515
Trme24428g00001 187 PANTHER POTASSIUM CHANNEL AKT1 8 187 IPR045319 GO:0005249|GO:0006813
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat profile. 59 91 IPR002110 GO:0005515
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat region circular profile. 92 119 - -
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat profile. 156 187 IPR002110 GO:0005515
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat region circular profile. 59 91 - -
Trme24428g00001 187 ProSiteProfiles Ankyrin repeat profile. 123 155 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24428g00001 1 187 Ion Channels AT5G37500 65.238 1.24e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24428g00001 K21867 - gmx:100814385 325.094