Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24423g00001 ATGCGAGTCGGTCTTCGCCTTAGTGTTTCTCTGTATACCTTCTTCCCTTTGGTCTCGGAGCTGGCTTCTGAACTTGCCGGTGGGATTTTAATGAAGCGAAGTCAAGTTAGAATTACGGGAGCCAATGCAGCAAACCAGCAACCTGATAAAACTGTAGTCCTTATTGATTTAGTGCCACTTGAGGAGAAGTTTGATAATACTACATCCTCTTTGATTTCTGAAAGGTTTTGGCATAAAAAGGTTGTTATTAAAGCCTCCTACTTTGGATACTATGATGTTTTATATGTGAACTATCCAGGTTTACCTCCTTCTCCTCCATTACCACCTTCAAGCATTAGCATGATAGATGGTGGTCCTTATTCCTCTGATGGCAATAATGGAAGGACAATAAAGCCCATTGGAGTTGACATACAGAAGAGGCAGAATAGAGRCGATCTTAGCRAAGGCTTTATTGCCATTGTTGCTGTTTCAGTTTTTGTAGCATTTGTTTTATGTATTGCTGCTGCCTATGTCATGTTCAAATTCAGAGTTCATGTTAGTCAACCAACATCGACTCCACGACTTTCACATCCTTCTCTTACCAAAGCATCAGTTACCGCTACTGGATCATTAATTGGAGACGGAGGGATTGGTTCGGTTTCCTCTTTATTTGAATCTAGCATTGCTGCTTATACAGTGTCTGCTAAGACTTTCAGTATGAATGACGTTGAGAAAGCTACTGATAATTTTCATGCTTCAAGAATACTTGGAGAAGGTGGATTTGGTCTTGTTTACAGTGGTGTCCTTGGAGATGGGACAAAAGTGGCAGTCAAGGTTCTAAAAAGGAGGGAGGATCATCAAGGTGATCGCGAATTCTTAGCTGAAGTTGAGATGCTTAGTCATCTTCACCATAGAAATCTGGTCAAGTTGATTG 913 0.4085 MRVGLRLSVSLYTFFPLVSELASELAGGILMKRSQVRITGANAANQQPDKTVVLIDLVPLEEKFDNTTSSLISERFWHKKVVIKASYFGYYDVLYVNYPGLPPSPPLPPSSISMIDGGPYSSDGNNGRTIKPIGVDIQKRQNRXDLSXGFIAIVAVSVFVAFVLCIAAAYVMFKFRVHVSQPTSTPRLSHPSLTKASVTATGSLIGDGGIGSVSSLFESSIAAYTVSAKTFSMNDVEKATDNFHASRILGEGGFGLVYSGVLGDGTKVAVKVLKRREDHQGDREFLAEVEMLSHLHHRNLVKLI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24423g00001 304 PANTHER OS01G0750732 PROTEIN 1 304 - -
Trme24423g00001 304 Gene3D Phosphorylase Kinase; domain 1 214 304 - -
Trme24423g00001 304 Pfam Protein tyrosine and serine/threonine kinase 245 304 IPR001245 GO:0004672|GO:0006468
Trme24423g00001 304 ProSiteProfiles Protein kinase domain profile. 243 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24423g00001 304 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524
Trme24423g00001 304 FunFam Somatic embryogenesis receptor kinase 1 212 304 - -
Trme24423g00001 304 SUPERFAMILY Protein kinase-like (PK-like) 215 304 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24423g00001 Trme-Chr24423 10 1208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24423g00001 1 304 Receptor kinase-like Gene Family AT5G56890 55.519 1.98e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme24423g00001 PK_Tyr_Ser-Thr 3.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24423g00001 - - lang:109347463 444.121