Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24402g00001 ATGAGCACAAATCTTGTCCTTTTGGATGGCTTCTCAAGACCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACTTGCTTTCAAATTTTGTTTTCGCCTTTTCACTTGTCTTGCTAGTGAGCCTCCCTGAAGGTTTCATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTAAATGTTTTGCAAGCTTCAGTTATATGGAACATTTGTAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGCAAGTGAATCACCTCTTGTGATTGAAGACTGTCGGCCGCCAAGAAACTGGCCCGAAACTGGAACAATATGTTTCCAAAATTTGCAGATACGTTATGCTGAAAATCTCCCATCTGTGTTGAAAAACATCACTTGCACGTTTCCTGGAAGGAAGAAAATCGGTGTTGTAGGACGAACTGGAAGTGGAAAATCAACTCTCATACAAGCCATTTTCAGGATGGTTGAACCAAGAGAGGGATGCATTATTATTGACAATGTGGACATATGTGAGATAGGTCTACATGACTTAAGGTCAAGGCTCAGCATTATCCCACAGGATCCAGCCTTGTTTGAAGGCACRGTTAGAGGAAATCTGGATCCTCTAGAGCAATACTCTGACAGAGAAGTGTGGGAG 684 0.4035 MSTNLVLLDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGFINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASESPLVIEDCRPPRNWPETGTICFQNLQIRYAENLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRMVEPREGCIIIDNVDICEIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDREVWE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24402g00001 228 Gene3D - 103 228 IPR027417 -
Trme24402g00001 228 Gene3D ABC transporter type 1, transmembrane domain 2 101 IPR036640 GO:0005524|GO:0016020
Trme24402g00001 228 FunFam ATP-dependent bile acid permease, putative 104 228 - -
Trme24402g00001 228 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 228 - -
Trme24402g00001 228 SUPERFAMILY ABC transporter transmembrane region 7 102 IPR036640 GO:0005524|GO:0016020
Trme24402g00001 228 Pfam ABC transporter 137 225 IPR003439 GO:0005524
Trme24402g00001 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 227 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24402g00001 Trme-Chr24402 228 1175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24402g00001 117 215 Calmodulin-binding Proteins AT2G36910 33.663 8.05e-13 65.5