Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24348g00001 ATGTCAGATGCTAGAGGGACAATGGGATATGTAGCTCCTGAGTTGTGGAATAGAAATTTTGGAGGTGTTTCACATAAGTCTGATGTTTATAGTTTCGGAATGATGCTGATGGAAATGGTTGGAGGGAGGAAAAATGTTATTGCTGATGCAAGTCAAACAAGTGAGATATACTTTCCTCATTGGGTATACAAGAAGCTTGATCTAGGCAGTGATTTGATACCAGGCGAAGTTATTACCGTAGAAGAAGGTGAAATTGCAAAGAGAATGACTATCGTGGGTTTATGGTGCATTCAAACATTTCCAAATGACAGACCAACAATGAGTAGAGTAATTGAAATGTTAGAAGGCAATGTGATTTCATTAGAAATACCACCAAAACCTATTCTTTCTTCTCCTACTAGATCAGTGCCAGGCTCTTCAACTTCATGA 429 0.3846 MSDARGTMGYVAPELWNRNFGGVSHKSDVYSFGMMLMEMVGGRKNVIADASQTSEIYFPHWVYKKLDLGSDLIPGEVITVEEGEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGNVISLEIPPKPILSSPTRSVPGSSTS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24348g00001 142 Pfam Protein tyrosine and serine/threonine kinase 5 114 IPR001245 GO:0004672|GO:0006468
Trme24348g00001 142 SUPERFAMILY Protein kinase-like (PK-like) 3 134 IPR011009 -
Trme24348g00001 142 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 131 IPR045874 GO:0004672
Trme24348g00001 142 Gene3D Transferase(Phosphotransferase) domain 1 1 125 - -
Trme24348g00001 142 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24348g00001 Trme-Chr24348 756 1184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24348g00001 1 141 Receptor kinase-like Gene Family AT5G39030 52.778 2.17e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme24348g00001 PK_Tyr_Ser-Thr 3.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24348g00001 - - tpra:123887353 254.603