Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24324g00001 ATGGCATCCAAATCCTCTAGCAATATCACTTCACAAGATCAAGGTGATTCTTCCCACACTAAAAAAGTGTCGAACATGAAGGAGAATGAGAAAGATCAATCCTCAAACTCTAATTCCAATAAGTCAATTGATTTCGTCAAACTATCGAAAGAGGATTTGGTTTGTAGGTCGAAGGTGCAAGAGTATGAATTTTTTGGCCCGATTCAAGTTGGTTCATCGTCTTGTTTTCCTGATAACAACAATGAAGGGGAAAATGAGAATAACAATGAGAAGAATTCGGAGTCAAGGTCTTTTTCATGTCACTTTTGCAAGAGACAATTTTCTACTTTACAAGCGTTAGGAGGACATCAAAATGCTCATAAAGCAGAACGTGCATTAGAAAAGCAACGTAGACAAAAGTATGATGACGGTGCTTCAAGTTTAGGGCAACCTCGCTTTAACCCTTATTTTAGTTATCCTAGTACTCTTTTTCCACCTTATAATTATAGGGCACTTGGGGTTAGAATGGAGTCAATGATTCGAAAACCAGCTTATTTTAACCCTAAGATTATCCACAATAGTTTTGGGTATGGTCATAATGCTATATGTTTGCAAGAGACATTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTTGGAATTCTAAGTATTAATGGTGGTGCAACTACATCAAGGATTGAAGATGGTGCAAATAATAAAATTGGTGCTATTCTAAAATTTGAAGATTCTTCTACAAGTTCAAACTCAAACATAGACAAGAAAAATATTGTGGCTCCTTTTTCTATCAAGAATGATATTCAACAATCAAAGTACAACATTGAAGAACAACCCTCCAATTATGAATCTTCTGAGCTTGATTTGTCCCTTAAGCTTTAA 897 0.3333 MASKSSSNITSQDQGDSSHTKKVSNMKENEKDQSSNSNSNKSIDFVKLSKEDLVCRSKVQEYEFFGPIQVGSSSCFPDNNNEGENENNNEKNSESRSFSCHFCKRQFSTLQALGGHQNAHKAERALEKQRRQKYDDGASSLGQPRFNPYFSYPSTLFPPYNYRALGVRMESMIRKPAYFNPKIIHNSFGYGHNAICLQETXXXXXXXXXXXXXXXXXXXGILSINGGATTSRIEDGANNKIGAILKFEDSSTSSNSNIDKKNIVAPFSIKNDIQQSKYNIEEQPSNYESSELDLSLKL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24324g00001 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Trme24324g00001 298 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 298 IPR044246 GO:0009788
Trme24324g00001 298 MobiDBLite consensus disorder prediction 120 135 - -
Trme24324g00001 298 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Trme24324g00001 298 MobiDBLite consensus disorder prediction 114 140 - -
Trme24324g00001 298 MobiDBLite consensus disorder prediction 1 43 - -
Trme24324g00001 298 MobiDBLite consensus disorder prediction 75 94 - -
Trme24324g00001 298 Coils Coil 197 200 - -
Trme24324g00001 298 SUPERFAMILY beta-beta-alpha zinc fingers 95 126 IPR036236 -
Trme24324g00001 298 Gene3D Classic Zinc Finger 82 142 - -
Trme24324g00001 298 MobiDBLite consensus disorder prediction 1 19 - -
Trme24324g00001 298 Pfam C2H2-type zinc finger 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24324g00001 Trme-Chr24324 219 1115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24324g00001 88 180 C2H2 Transcription Factor Family AT5G10970 40.860 3.26e-14 69.7