Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme242810g00001 GGTGGTATTGTGAACAACACATTAAGACCAACAATCCCAACTTATTGCGATCTAGAATGGAGAACACTAATGGAGCAGTGTTGGGCCCCTAATCCTGCAGTCAGACCATCCTTTACAGAAATTGCACGCCGCTTGCGTGTGATGTCTGCGGCTGCTATTCAGACCAAAGGACCTAAAGCATCTAAATGA 189 0.4603 GGIVNNTLRPTIPTYCDLEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAIQTKGPKASK 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme242810g00001 62 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Trme242810g00001 62 Pfam Protein tyrosine and serine/threonine kinase 5 45 IPR001245 GO:0004672|GO:0006468
Trme242810g00001 62 SUPERFAMILY Protein kinase-like (PK-like) 5 50 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme242810g00001 Trme-Chr242810 2 190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme242810g00001 1 62 MAP Kinase Kinase Kinase AT1G16270 75.758 3.58e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme242810g00001 PK_Tyr_Ser-Thr 1.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme242810g00001 - - mtr:120578222 120.553