Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme242731g00001 ATGTCCATCACAAAGGAATCTCAAGTTCAAGCTCAAGCCGAATCTCAACCTGGCTCAACAACAAGATGCGGCTCCAAGAAACGTAATTCCGCATTCTACGGAGTGCGGAAACGTACCTGGGGGCGCTTTGTTTCGGAGATAAGGCTACCGGGCCAAAAAACTCGAATATGGCTAGGATCATTCGAGTCAGCTGAAATGGCGGCGCGTGCTTATGACTCTGCGGCTTATTTCTTAAAAG 238 0.4874 MSITKESQVQAQAESQPGSTTRCGSKKRNSAFYGVRKRTWGRFVSEIRLPGQKTRIWLGSFESAEMAARAYDSAAYFLK 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme242731g00001 79 Pfam AP2 domain 33 78 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 79 - -
Trme242731g00001 79 SMART rav1_2 31 79 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 MobiDBLite consensus disorder prediction 1 27 - -
Trme242731g00001 79 PIRSF PTI6 1 79 IPR017392 GO:0003700
Trme242731g00001 79 CDD AP2 30 75 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 ProSiteProfiles AP2/ERF domain profile. 31 79 IPR001471 GO:0003700|GO:0006355
Trme242731g00001 79 Gene3D AP2/ERF domain 31 79 IPR036955 GO:0003700|GO:0006355
Trme242731g00001 79 SUPERFAMILY DNA-binding domain 30 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme242731g00001 Trme-Chr242731 107 344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme242731g00001 30 79 AP2-EREBP Transcription Factor Family AT1G71450 68.000 1.50e-19 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme242731g00001 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme242731g00001 K09286 - cit:102615809 98.9821