Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme242647g00001 ATGCCTAGACGAAAGATAAAACTTGCTTTTATCTCTGATGAGTTGGCAAGGAAGGTAACCTACAACAAAAGAAAGAAGGGTCTCATTAAGAAGGGAGCCGTGAAGGTGATTGAGAGGTATCAGAATTCATATATGCGAGATGAAAAGAGGAATGTGACCCAAGAAAGATTCACCATGCAGATGATTACCAAAGCTACGGACCAGATAAGAAAGATGAAACACGACAATCGTGAGAACGAGCTTAATCTTCTTATGTTCGT 260 0.4 MPRRKIKLAFISDELARKVTYNKRKKGLIKKGAVKVIERYQNSYMRDEKRNVTQERFTMQMITKATDQIRKMKHDNRENELNLLMFV 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme242647g00001 87 SMART madsneu2 1 49 IPR002100 GO:0003677|GO:0046983
Trme242647g00001 87 SUPERFAMILY SRF-like 1 32 IPR036879 GO:0003677|GO:0046983
Trme242647g00001 87 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 31 IPR002100 GO:0003677|GO:0046983
Trme242647g00001 87 ProSiteProfiles MADS-box domain profile. 1 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme242647g00001 Trme-Chr242647 1 353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme242647g00001 3 86 Type I MADS-box Gene Family AT1G65330 31.034 6.08e-08 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme242647g00001 SRF-TF 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme242647g00001 - - tpra:123888139 105.916