Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24243g00001 AAAATCAAGAATGCTGATGTAATAGAACCATGGGAACTTGAAATTGGGCCACATAGATACTCCTATCAAGAGCTCAAGAAAGCTACAAAAGGTTTCAAGGATAAAGAGTTACTTGGACAAGGTGGTTTTGGAAGAGTTTACAAAGGGACGTTGCCGAAATCAAAGATCCAAATAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGCTAAGGGAATTTGTGTCTGAAATCTCAAGCTTAGGACGGCTTTGCCACCGGAATTTGGTTCAGTTACTCGGTTGGTGTCGCCGCAGAGGCGACCTTTTACTTGTGTATGATTTCATGGCTAATGGAAGCTTAGACAAGTACTTGTTTGAAGATTCAGAAATTGTGCTAAGTTGGGAACAAAGGCTTAAGATAATAAAGGATGTTGCTTCAGGTCTTTCGTTTTTGCATGAAGGCTTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTAATCCCGGCACAACAAGAATTGTGGGAACATTAGGCTATTTGGCACCGGAGTTGCCTAGAACAGGAAAGGCATCTACAAGCTCCGACGTTTTTGCATTTGGCGCACTGTTACTCGAGGTTGCTTGCGGAAGAAGGCCTATTGAGCCAAAGGCATTAGAAGAAGAGTTGGTGTTGGTTGAATGGGTGTGGGAAAAGTATAAACAAGGAAGGTTACTTGAAGTAGTGGATCCTAAATTAAATGGTAGTTTGGATGAAAGTGAGGTTATAATGGTGTTGANNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGTGAGGATTTTGGATGGAGAAGTTGAGTTGCCAAATGAATTGAGAAAGCCAGGAGTTATTGATTCACAAGAAGGGTTTGATGAATTTTTGCATTCTTTTGGAACTTCTTCATTTGATAAGACAAGTTCAAGCTCATATCTTGGAAATAGAGATGTGAATACTAATACTAGTTCTATCTCTTTTGCTAATTCACCTCAATCACTTGTG 1101 0.3397 KIKNADVIEPWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGRVYKGTLPKSKIQIAVKRVSHESKQGLREFVSEISSLGRLCHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEDSEIVLSWEQRLKIIKDVASGLSFLHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPGTTRIVGTLGYLAPELPRTGKASTSSDVFAFGALLLEVACGRRPIEPKALEEELVLVEWVWEKYKQGRLLEVVDPKLNGSLDESEVIMVLXXXXXXXXXXXXXXXXXXXXVRILDGEVELPNELRKPGVIDSQEGFDEFLHSFGTSSFDKTSSSSYLGNRDVNTNTSSISFANSPQSLV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24243g00001 367 Gene3D Phosphorylase Kinase; domain 1 17 108 - -
Trme24243g00001 367 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Trme24243g00001 367 SUPERFAMILY Protein kinase-like (PK-like) 11 248 IPR011009 -
Trme24243g00001 367 ProSiteProfiles Protein kinase domain profile. 32 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24243g00001 367 PANTHER - 190 278 - -
Trme24243g00001 367 Coils Coil 186 187 - -
Trme24243g00001 367 Gene3D Transferase(Phosphotransferase) domain 1 179 282 - -
Trme24243g00001 367 Coils Coil 278 278 - -
Trme24243g00001 367 Pfam Protein tyrosine and serine/threonine kinase 35 147 IPR001245 GO:0004672|GO:0006468
Trme24243g00001 367 FunFam Lectin-domain containing receptor kinase A4.3 17 108 - -
Trme24243g00001 367 Gene3D Transferase(Phosphotransferase) domain 1 109 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24243g00001 Trme-Chr24243 172 1272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24243g00001 1 365 Receptor kinase-like Gene Family AT3G55550 49.185 2.04e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme24243g00001 PK_Tyr_Ser-Thr 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24243g00001 - - gmx:100784346 477.248