Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2421g00001 ATGTTTTCCAACCACTTTGCACAATACGACAGCGCTTGCTTTTTGGAAAATGTAAGAGAAGAAGTAGAAAAGTTTGGACTAAGATACATCCGTAATAAGCTTTTCAGTGCGCTACTAAAGAGAGAAATTACTGCATCTGATATTCTTGGAGCCACATTCATTGAGAGGATGCTCAGTGGGAGAAAAGTTTTCATTGTACTTGACGATGTGGGTAATGCTGCACAATTAGAATATTTGTGTGAAGAACTAGATGACCTTGACCCAAACAGTAGGCTCATTGTTACAGCAAGAGATAGGCACACACTGAGGAGAAAAGTTGATGAAATATATGAGGTCACAGCATGGGATTTTGAAAAATCTTTGAGGATTTTTAGCTTAGCAGCTTTCAAGCAAAACCACCCTAAAGACGGTTACAAGCTTCTGTCGCAAAGGGCGGTTGTATATGCAGGAGGCATTCCGTTGGCTTTAAAAGTTTTGGGTTCACATTTTTATTCTAGAAATCTTGAATTCTGGGAACCTGAATTGAAATATTTGGAGACCAAGGGGGAATCCTTACATGAAATTCTAGAAGTGTTAAAAGTGAGCTATAATGGATTAACAGCCCGAGAAAAGGAAATATTTCTAGATATTGCATTTTTTTTCAAAGATGAACATCGTGAGTTTGTGAAAAGGATACTAGATGCCTATGGTTTCAACGCTACCAGTGGAATAGACATTCTTAAAGATAAAGCTCTTATCACTATTTCTAATTTTGGTGGCATACAAATGCATGATTTATTACAAGAAATGGCTTTTGACATAGTTCGGCAAAAGAAAGACCGCACTAGCAGAGACCCGGGAAAGCGCAGCCGCTTAAGAAATATTGAGGATGTTTGCGATGTATTTAAAAATAGCAAGGGGACACATAAAGTTGAAGGAATAACATTAGATTTGTCTGAAAAGAGAGATTTGCATGTTAAGGCTGACACCTTCAACATGATGACTAAATTAAAATTTCTAAGATTGTATGTCCCCTTGAACAAGAATAGATCAGCTACCATATATCATTCTGAAGATATGATGCCGTTCTCTGATAAATTGAGATGTCTTGAGTGGAATGGATGTCCCTTCCACAACCTTTTTGTGCTGAGCTACTTGTTGAGATTCACTTGCCGCATAGCAGTGTAA 1167 0.3779 MFSNHFAQYDSACFLENVREEVEKFGLRYIRNKLFSALLKREITASDILGATFIERMLSGRKVFIVLDDVGNAAQLEYLCEELDDLDPNSRLIVTARDRHTLRRKVDEIYEVTAWDFEKSLRIFSLAAFKQNHPKDGYKLLSQRAVVYAGGIPLALKVLGSHFYSRNLEFWEPELKYLETKGESLHEILEVLKVSYNGLTAREKEIFLDIAFFFKDEHREFVKRILDAYGFNATSGIDILKDKALITISNFGGIQMHDLLQEMAFDIVRQKKDRTSRDPGKRSRLRNIEDVCDVFKNSKGTHKVEGITLDLSEKRDLHVKADTFNMMTKLKFLRLYVPLNKNRSATIYHSEDMMPFSDKLRCLEWNGCPFHNLFVLSYLLRFTCRIAV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2421g00001 388 PRINTS Disease resistance protein signature 57 71 - -
Trme2421g00001 388 PRINTS Disease resistance protein signature 149 163 - -
Trme2421g00001 388 SUPERFAMILY "Winged helix" DNA-binding domain 187 294 IPR036390 -
Trme2421g00001 388 Pfam NB-ARC domain 30 197 IPR002182 GO:0043531
Trme2421g00001 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 210 IPR027417 -
Trme2421g00001 388 Gene3D - 2 109 IPR027417 -
Trme2421g00001 388 Gene3D - 116 200 IPR042197 -
Trme2421g00001 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 373 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2421g00001 Trme-Chr2421 93 1346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2421g00001 1 371 WRKY Transcription Factor Family AT5G45050 27.835 3.55e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2421g00001 - - mtr:11419903 567.77