Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24218g00001 GGACGCTTAGATTCTTGCACAACCAATGGTGGCAGAACAGGCTTCTTCAACACCTGCAGAATAGGCTCGGGTGACTTCTGCGGTGAAGAGCTTCTCCCGTGGGCCTTAGACCCTCGTCCAACCGCTGTACTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACCGAGGTTGAAGCTTTTGCGCTCATTGCAGAGGACTTAAAGTTTGTTGCAGCACAATTCCGTCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGCGGACATGGGCTGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAATGAAAGAGACGAATGAGGTTAAGGAAAAGGAGAATGTTATGATGATGGCAACAAATGTGAAATATTATGGAAATGATGATAGTCAATATTTCTCTGCACCTCTGCAGGTTCCAATGGGATCAAGTTATCCAATGTATTCCGGGAAACTTGTAGGTAATCTAAGGAGAGGTAGGAGCATGAGATATGGTTCTGAACTTGATATTCTTGGTGGATTAAGGAAGCCTATTGATCCAGATTTTAATGATGATGGTGGTTAA 588 0.4405 GRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENVMMMATNVKYYGNDDSQYFSAPLQVPMGSSYPMYSGKLVGNLRRGRSMRYGSELDILGGLRKPIDPDFNDDGG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24218g00001 195 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 127 - -
Trme24218g00001 195 SUPERFAMILY cAMP-binding domain-like 1 76 IPR018490 -
Trme24218g00001 195 Gene3D Jelly Rolls 1 76 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24218g00001 Trme-Chr24218 3 590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24218g00001 1 122 Ion Channels AT2G28260 77.049 6.84e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24218g00001 K05391 - gmx:100815543 301.597