Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24215g00001 TGTGATGAACGAATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGACATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCATGAATACCACGCTGATCTTATTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGGCAAGTTTTTTCACCAGGTTCAAATTCTCAACCCCATGATCTGGAAGAGAGAACCCGTCGGCAACCAGTAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTTTTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNAGTTTTGACATGCAGCAGCATCCCCCACAAGAACTTTCCCAGTTTACCGACAGGCAGCAATCAGTAGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCCGCCATTGTCCCCCCACACTCAAACCCAATGCTGAACCCACCCATGCCATTTGGTTATCCCCCTTACCCGCAAGACCGATCCCAACCATTTTATGCTGCTCCCTATGATAATATGCCTAGGCAGGACTCAGCTTCTGATATAGTTGGGGACCCAAATTCATTAATGGGTTTCCCTCAAGGTGTCCCGAATGGCCCAAATTTTCAAGGCAATTATCCCCAACCCTGGAATGCGGCAGGTGTTCCTTTTGAACAAGCACAAGGTGGTGGCATGGTTGTGGATCCAAGGGATGCCAAAGGCATACTGGCACCACAACCCATGACCCTCCCACCACCACCGCCGCCACCAGCACACATGATGAAACAGAACTACTATTCTGGTGAGCATGGACATGATGGTCAAGGTTATGGCTGGCAGCATGATAACCGTGACAGCTTTAATGGTCAAGGCTAA 996 0.4468 CDERIQKIQTVKVMEGILVCAAPHCLKTFFKRAEFESHIHEYHADLIPSNPDKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQPHDLEERTRRQPVRDQTPSRPTMQQKPPFFXXXXXXXXXXXXXXXXXXXXXXXXSFDMQQHPPQELSQFTDRQQSVGPDNSFPEYPTMHPAQPAIVPPHSNPMLNPPMPFGYPPYPQDRSQPFYAAPYDNMPRQDSASDIVGDPNSLMGFPQGVPNGPNFQGNYPQPWNAAGVPFEQAQGGGMVVDPRDAKGILAPQPMTLPPPPPPPAHMMKQNYYSGEHGHDGQGYGWQHDNRDSFNGQG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24215g00001 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 48 IPR013087 -
Trme24215g00001 331 MobiDBLite consensus disorder prediction 46 331 - -
Trme24215g00001 331 MobiDBLite consensus disorder prediction 286 300 - -
Trme24215g00001 331 ProSitePatterns Zinc finger C2H2 type domain signature. 20 43 IPR013087 -
Trme24215g00001 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 321 IPR040383 GO:0016567|GO:0061630
Trme24215g00001 331 MobiDBLite consensus disorder prediction 61 90 - -
Trme24215g00001 331 MobiDBLite consensus disorder prediction 46 60 - -
Trme24215g00001 331 MobiDBLite consensus disorder prediction 179 205 - -
Trme24215g00001 331 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24215g00001 Trme-Chr24215 153 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24215g00001 1 327 C2H2 Transcription Factor Family AT5G01160 32.738 1.59e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24215g00001 K15685 - gmx:100817582 448.743