Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme242088g00001 ATGATTATGTGGAAATTGTCGCATGTAGGATCAAACAAGAAACATGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGATTACTTTATCTTCATGAAGACTCTCACGACTGCATAATTCATCGTGACATAAAGGCAGCCAACATTTTACTTGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCCTCGCTCGTCTCTTCCCTGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACAC 262 0.4084 MIMWKLSHVGSNKKHELDWKRRFDIINGVARGLLYLHEDSHDCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGT 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme242088g00001 87 Pfam Protein kinase domain 16 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme242088g00001 87 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme242088g00001 87 ProSiteProfiles Protein kinase domain profile. 1 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme242088g00001 87 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 13 87 - -
Trme242088g00001 87 SUPERFAMILY Protein kinase-like (PK-like) 12 87 IPR011009 -
Trme242088g00001 87 FunFam Os07g0541700 protein 6 87 - -
Trme242088g00001 87 Gene3D Transferase(Phosphotransferase) domain 1 4 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme242088g00001 Trme-Chr242088 1 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme242088g00001 13 87 Receptor kinase-like Gene Family AT4G11530 63.158 7.34e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme242088g00001 Pkinase 9.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme242088g00001 - - lja:Lj0g3v0201669.1 156.762