Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme241g00002 ATGGTTTATGAGAAAATCGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACATGGAAGTGTTTACAAAGCAAAATTGCACACAGGTCAAGTTGTTGCAGTGAAAAAGCTCCATAACCATTCAGTTGCAAATGAAGAAAATCTCATCAATCTAAAAAAATCATTCACAAATGAGATTCAAGCGTTGACTGCAATTCAACATCGAAACATTGTCAAGTTATATGGATTTTGCTCACATTCACGTTTGTCATTTTTGGTTTATGAGTTCATTGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAAGAAGCGATTGAATTTGATTGGAATAAGAGGGTGAATGTTATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTCTCCTGGATTTCGAATGCGTGGCTCATGTATCTGACTTTGGAACATCTAAGCTTCTTAATTTTAATTCACCCAACTCCACCTCATTTGCATACACATTTGGATACGCTGCTCCAGAACTTGCATACACAACAAAAGTAACTGAGAAATATGATGTGTATAGTTTTGGGATATTAGCATTGGAAATATTATTTGGAAGACATTCTGGAGATGTTATATCTTTTGTTAGCTCTTCTACACTTGATGATAATACTATGCCACTTATCTATAAGTTGGATCAACGTCTTCCTCGTCCTTTGCATCCCATGGACAAGAAGTTAGTATCAATTGCAAGGACAGCTTTTGCATGTTTAATTGAAAATCCGCAATCTCGCCCTACCATGGAGCAGGTTTCCAAGGACATGTTAAAGTGA 864 0.3611 MVYEKIVEATEEFDDKYLIGVGGHGSVYKAKLHTGQVVAVKKLHNHSVANEENLINLKKSFTNEIQALTAIQHRNIVKLYGFCSHSRLSFLVYEFIEKGSLEKILKDDEEAIEFDWNKRVNVIKDVANALCYMHHDCSPPIVHRDISSKNILLDFECVAHVSDFGTSKLLNFNSPNSTSFAYTFGYAAPELAYTTKVTEKYDVYSFGILALEILFGRHSGDVISFVSSSTLDDNTMPLIYKLDQRLPRPLHPMDKKLVSIARTAFACLIENPQSRPTMEQVSKDMLK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme241g00002 287 Pfam Protein kinase domain 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme241g00002 287 FunFam MDIS1-interacting receptor like kinase 2 96 287 - -
Trme241g00002 287 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Trme241g00002 287 ProSiteProfiles Protein kinase domain profile. 13 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme241g00002 287 Coils Coil 286 287 - -
Trme241g00002 287 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 95 - -
Trme241g00002 287 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Trme241g00002 287 ProSitePatterns Tyrosine protein kinases specific active-site signature. 141 153 IPR008266 GO:0004672|GO:0006468
Trme241g00002 287 PANTHER LEUCINE RICH REPEAT KINASE 2 1 285 - -
Trme241g00002 287 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Trme241g00002 287 Gene3D Transferase(Phosphotransferase) domain 1 96 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme241g00002 Trme-Chr241 3839 4979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme241g00002 3 189 Receptor kinase-like Gene Family AT4G08850 58.421 1.94e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme241g00002 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme241g00002 - - tpra:123888271 422.935