Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24193g00001 ATGGCTGAAGCTTCTGATGTTAAAGCTTCATTGCCTGAAGCAGAGAAGAAGAAAGAACAAAGTTTACCCTTTTATCAGCTTTTCTCATTTGCTGATAAATATGATTGGTTTCTTATGATCTCAGGAAGTATTGGTGCCATTATTCATGGTTCTTCTATGCCTGTTTTTTTTCTTCTTTTTGGTCAAATGGTTAATGGTTTTGGTAAAAACCAAATGGATTTGAAGAAAATGACTGATGAAGTTTCCAAGTATGCACTTTACTTTGTGTACCTTGGCCTTGTTGTATGTATGTCATCTTATGCAGATGCTAGAACAGGAGATATAGTTTTCAGTGTCTCAACTGATACACTATTAGTCCAAGATGCTATTAGTGAGAAG 378 0.3519 MAEASDVKASLPEAEKKKEQSLPFYQLFSFADKYDWFLMISGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQMDLKKMTDEVSKYALYFVYLGLVVCMSSYADARTGDIVFSVSTDTLLVQDAISEK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24193g00001 126 PANTHER ABC TRANSPORTER B FAMILY 6 100 IPR039421 -
Trme24193g00001 126 Gene3D ABC transporter type 1, transmembrane domain 17 104 IPR036640 GO:0005524|GO:0016020
Trme24193g00001 126 SUPERFAMILY ABC transporter transmembrane region 27 124 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24193g00001 Trme-Chr24193 31 1045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24193g00001 13 126 Calmodulin-binding Proteins AT2G36910 37.162 1.16e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24193g00001 K05658 - csav:115699259 205.297