Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme241909g00001 ATGGCTGCTATTCCCCTTGGCCTTCAGCAGCGCGATGTTATCGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCTGTTGTTATGGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATATGGGAATTAAAGTGGTTTCCATTGTCGGTGGACAGTCCATTGAGGAACAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCCACTCCTGG 323 0.4675 MAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme241909g00001 108 Pfam DEAD/DEAH box helicase 2 108 IPR011545 GO:0003676|GO:0005524
Trme241909g00001 108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 108 IPR027417 -
Trme241909g00001 108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 108 IPR014001 -
Trme241909g00001 108 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 108 - -
Trme241909g00001 108 Gene3D - 1 108 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme241909g00001 Trme-Chr241909 1 323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme241909g00001 5 108 Eukaryotic Initiation Factors Gene Family AT3G13920 38.053 7.33e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme241909g00001 K12858 - gmx:100792810 209.149