Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24186g00001 ATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGCCATACAAGAGAACTAGCTTACCAGATATGCCACGAGTTTGAGAGGTTTAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAGATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGGCTAGGGAGAAGAATCTTTCTCTGAAGAATGTTAGGCATTTTGTTTTAGATGAATGCGATAAGATGCTCGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGTCCG 465 0.4172 MDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRP 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24186g00001 155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 155 IPR014001 -
Trme24186g00001 155 Gene3D - 1 155 IPR027417 -
Trme24186g00001 155 SMART ultradead3 1 154 IPR014001 -
Trme24186g00001 155 Pfam DEAD/DEAH box helicase 2 152 IPR011545 GO:0003676|GO:0005524
Trme24186g00001 155 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 154 - -
Trme24186g00001 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24186g00001 Trme-Chr24186 303 961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24186g00001 1 155 Eukaryotic Initiation Factors Gene Family AT5G11170 90.968 4.68e-105 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24186g00001 K12812 - gmx:100796232 305.064