Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24128g00001 GGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCTGGTTCAGGAGTTACGGTAGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAACTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTAGAGAATCATCTTTTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCCAAAGGATTGGCCTTCCTCCATAGTGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGTCCTCAAGGAGACAAAACACATGTTTCTACTAGAGTTGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTTATGACAGGTAAAAAAATGTAA 546 0.4286 GEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHSGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGKKM 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24128g00001 181 FunFam Serine/threonine-protein kinase BIK1 1 79 - -
Trme24128g00001 181 PANTHER OS01G0588500 PROTEIN-RELATED 1 179 - -
Trme24128g00001 181 Pfam Protein tyrosine and serine/threonine kinase 1 178 IPR001245 GO:0004672|GO:0006468
Trme24128g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 81 180 - -
Trme24128g00001 181 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Trme24128g00001 181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Trme24128g00001 181 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme24128g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 1 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24128g00001 Trme-Chr24128 1 1097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24128g00001 1 179 Glycoside Hydrolase AT3G07070 60.109 6.38e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme24128g00001 PK_Tyr_Ser-Thr 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24128g00001 - - aprc:113848012 366.311