Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24122g00001 ATGGGATGTGATGCATCAATTTTGCTTAACCACTTAGGGAGTGAGAGAAAAGCTTTTGAGAGTAGATCCTTGAGAGGTTTTCAATTGATTGATGAAATCAAGGTTGAGCTAGAGAAGAGGTGTCCAAGAACAGTGTCATGTGCTGACATTCTCACAGCTGCTGCAAGAGATGCAACAATTTTAGCTGGAGGACCATTTTGGGAAGTTCCATTCGGCCGAAAAGACGGCAAGATTTCATTAGCCAAAGAAGCAAATTTGGTTCCACAAGGACATGAAAACATAACAGGTTTGATTGGTTTTTTTCAAGAAAGAGGACTTGACATGCTTGATTTGGTTACTCTCTCAGGCTCACACACAATTGGAAGAAGTACTTGTTATTCTGTTATGAATAGGATTTACAATTTCAATGGAACTGGTAAACCTGATCCTTCACTTAGTATCTATTACTTGAAGATGTTGAGGAAAAGATGTAAAAAAGATTTGGATTTGGTGCACCTTGATGTTATAACTCCTAGGACTTTTGACACAACATATTACACAAACCTTAAGAGGAAAGTTGGTTTGTTGTCAACAGATCAATTGTTGTTTTCAGATGTAAGGACAGGTCCTTTTGTGGAAGCATTTGCAACACAACCTTTTCTTTTTACTAGTCAATTTGCTGTGTCAATGGTGAAGCTTGGGAATGTTCAAGTTTTGACTAGGCCTAATGAAG 712 0.3806 MGCDASILLNHLGSERKAFESRSLRGFQLIDEIKVELEKRCPRTVSCADILTAAARDATILAGGPFWEVPFGRKDGKISLAKEANLVPQGHENITGLIGFFQERGLDMLDLVTLSGSHTIGRSTCYSVMNRIYNFNGTGKPDPSLSIYYLKMLRKRCKKDLDLVHLDVITPRTFDTTYYTNLKRKVGLLSTDQLLFSDVRTGPFVEAFATQPFLFTSQFAVSMVKLGNVQVLTRPNE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24122g00001 237 CDD secretory_peroxidase 2 233 IPR033905 GO:0004601|GO:0042744
Trme24122g00001 237 PRINTS Plant peroxidase signature 165 180 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 44 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 181 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 25 38 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 109 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 221 234 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Plant peroxidase signature 63 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 FunFam Peroxidase 88 226 - -
Trme24122g00001 237 ProSitePatterns Peroxidases proximal heme-ligand signature. 110 120 IPR019793 -
Trme24122g00001 237 PANTHER PEROXIDASE 25-RELATED 2 233 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 Pfam Peroxidase 2 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 ProSiteProfiles Plant heme peroxidase family profile. 1 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 Gene3D Peroxidase, domain 2 88 226 - -
Trme24122g00001 237 Gene3D - 2 234 - -
Trme24122g00001 237 SUPERFAMILY Heme-dependent peroxidases 2 231 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Haem peroxidase superfamily signature 45 62 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Haem peroxidase superfamily signature 63 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Haem peroxidase superfamily signature 167 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme24122g00001 237 PRINTS Haem peroxidase superfamily signature 110 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24122g00001 Trme-Chr24122 395 1214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24122g00001 2 233 Peroxidase AT1G30870 51.931 5.28e-86 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24122g00001 K00430 - gmx:100792775 419.468